CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9311 (NC_008319 2606749 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 142     Density of SSR      : 1SSR/ 18.23 kb   Average length of SSR  : 13.37 bp
Coding      : 124     Non-Coding           : 14   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 2 73 50 6 9 142
IMPERFECT 3 68 944 677 69 37 1798
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCAGC)31599779991Coding
2. (AATC)3121437014381Coding
3. (GCGCG)3154198241996Coding
4. (GCTC)3125415154162Coding
5. (TCG)4127360373614Coding
6. (CTG)412102554102565Coding
7. (GCCT)312113922113933Coding
8. (CTT)515115588115602Coding
9. (TGT)412128888128899Coding
10. (AGTG)312142622142633Coding
11. (ACCA)312154002154013Coding
12. (GATATG)318158457158474Coding
13. (GCT)412200285200296Coding
14. (C)1919200298200316Coding
15. (TGC)412204163204174Coding
16. (CCAA)312215318215329Coding
17. (TGG)412218344218355Coding
18. (GTG)412278969278980Coding
19. (CTGG)312332136332147Coding
20. (AGC)515335160335174Coding
21. (GGC)412359238359249Coding
22. (CCT)412361754361765Coding
23. (GATCA)315363122363136Coding-Non coding
24. (GCTT)312368977368988Coding
25. (CTG)412398893398904Coding
26. (TGGTGA)318439174439191Coding
27. (GATC)312443872443883Non coding
28. (GATC)312458262458273Coding
29. (TGAT)312497723497734Coding
30. (TTCTT)315503479503493Coding
31. (ATGG)312514170514181Non coding
32. (CTGC)312539645539656Coding
33. (TCCA)312543744543755Coding
34. (GTTG)312586522586533Non coding
35. (GGT)515609918609932Coding
36. (TCTTCC)742625506625547Coding
37. (TGA)412627579627590Non coding
38. (TGG)412641313641324Coding
39. (TGC)412690638690649Coding
40. (GCG)412738342738353Coding
41. (GGC)412763441763452Coding
42. (TGA)412769975769986Coding
43. (TTA)412770650770661Non coding
44. (TC)612801573801584Non coding
45. (GCT)515832917832931Coding
46. (TTGG)312871464871475Coding
47. (CAC)412914441914452Coding
48. (GGTT)312920977920988Coding
49. (ACC)412933255933266Coding
50. (GCC)618954444954461Coding
51. (CCG)515954466954480Coding
52. (GCC)515954483954497Coding
53. (GCCACC)318954510954527Coding
54. (GATC)312959704959715Coding
55. (CTT)412973088973099Non coding
56. (AATG)31210142241014235Coding-Non coding
57. (GATG)31210428061042817Non coding
58. (GCTT)31210449751044986Coding
59. (CCAG)31210638811063892Coding
60. (CAG)41210814161081427Coding
61. (GTCA)31210969691096980Coding
62. (GAGC)31211449241144935Coding
63. (GTCA)31211792281179239Coding
64. (TTTC)31212079251207936Coding
65. (GATC)31212381691238180Coding
66. (CCAC)31212995781299589Coding
67. (ATC)41213258321325843Coding
68. (ATC)41213389061338917Coding
69. (TGC)41213414231341434Coding
70. (AATA)31213471411347152Coding
71. (G)131313644071364419Non coding
72. (GGTAGT)31813731621373179Non coding
73. (TGA)41213805641380575Coding
74. (TGG)41213821561382167Coding
75. (TGG)41213838961383907Coding
76. (CAA)41214167821416793Coding
77. (GAGCT)31514192061419220Coding
78. (TCAT)31214237381423749Non coding
79. (CCA)41214322131432224Coding
80. (TGG)41214442761444287Coding
81. (GTG)41214464661446477Coding
82. (TGG)41214467161446727Coding
83. (GCT)41214538961453907Coding
84. (GAA)41214607211460732Coding
85. (TGCC)31214778521477863Coding
86. (GCCT)31214988921498903Coding
87. (CGTC)31215045231504534Coding
88. (TTCA)31215078791507890Non coding
89. (TCG)41215326601532671Coding
90. (CAGC)31215373301537341Non coding
91. (GCATGA)42415505351550558Coding
92. (TTC)51515879091587923Coding
93. (CAAC)31215926131592624Coding
94. (ATGC)31216052541605265Coding
95. (ATCA)31216077721607783Coding-Non coding
96. (GCAA)41616197041619719Coding
97. (GCT)41216341071634118Coding
98. (CAAG)31216421691642180Coding
99. (CCA)41216798001679811Coding
100. (CAG)41217019321701943Coding
101. (GAA)41217027491702760Coding
102. (CGCT)31217560831756094Coding
103. (CGC)41217681611768172Coding
104. (TCG)41217853981785409Coding
105. (GGTC)31217983651798376Coding
106. (CAG)41218240871824098Coding
107. (GGC)51518759651875979Coding
108. (CCA)41218821741882185Coding
109. (GGCAGA)31819256621925679Coding
110. (CAG)41219573691957380Coding
111. (CAAA)31219582571958268Coding
112. (CT)61219653151965326Coding
113. (ACC)41219701571970168Coding
114. (CAG)41219977801997791Coding
115. (CAAG)31220019042001915Coding
116. (GCGGC)31520413412041355Coding
117. (ACA)41220525762052587Coding
118. (ACTGGG)31820585612058578Coding
119. (GAGT)31220711962071207Coding
120. (ATTA)31221102832110294Coding-Non coding
121. (GAT)41221339962134007Coding
122. (ACG)51521627422162756Coding
123. (CCT)41222089022208913Coding
124. (GCA)41222435042243515Coding
125. (TGG)41222601172260128Coding
126. (TGG)41222622792262290Coding
127. (CGG)41222847362284747Coding
128. (GCCA)31222939662293977Coding
129. (GCC)41223190472319058Coding
130. (AGC)41223221172322128Coding
131. (CTG)41224180802418091Coding
132. (AAG)41224196042419615Coding
133. (AGA)72124196202419640Coding
134. (CCT)51524324062432420Coding
135. (AGCGGC)31824424142442431Coding
136. (ATCT)31224836662483677Coding
137. (GCT)41225239862523997Coding
138. (CATG)31225504152550426Coding-Non coding
139. (CGA)41225675902567601Non coding
140. (AATG)31225825942582605Coding
141. (AGA)41225890692589080Coding
142. (GCC)51526057122605726Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.