CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9311 (NC_008319 2606749 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 142     Density of SSR      : 1SSR/ 18.23 kb   Average length of SSR  : 13.37 bp
Coding      : 124     Non-Coding           : 14   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 2 73 50 6 9 142
IMPERFECT 3 68 944 677 69 37 1798
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCG)4127360373614Coding
2. (CTG)412102554102565Coding
3. (CTT)515115588115602Coding
4. (TGT)412128888128899Coding
5. (GCT)412200285200296Coding
6. (TGC)412204163204174Coding
7. (TGG)412218344218355Coding
8. (GTG)412278969278980Coding
9. (AGC)515335160335174Coding
10. (GGC)412359238359249Coding
11. (CCT)412361754361765Coding
12. (CTG)412398893398904Coding
13. (GGT)515609918609932Coding
14. (TGA)412627579627590Non coding
15. (TGG)412641313641324Coding
16. (TGC)412690638690649Coding
17. (GCG)412738342738353Coding
18. (GGC)412763441763452Coding
19. (TGA)412769975769986Coding
20. (TTA)412770650770661Non coding
21. (GCT)515832917832931Coding
22. (CAC)412914441914452Coding
23. (ACC)412933255933266Coding
24. (GCC)618954444954461Coding
25. (CCG)515954466954480Coding
26. (GCC)515954483954497Coding
27. (CTT)412973088973099Non coding
28. (CAG)41210814161081427Coding
29. (ATC)41213258321325843Coding
30. (ATC)41213389061338917Coding
31. (TGC)41213414231341434Coding
32. (TGA)41213805641380575Coding
33. (TGG)41213821561382167Coding
34. (TGG)41213838961383907Coding
35. (CAA)41214167821416793Coding
36. (CCA)41214322131432224Coding
37. (TGG)41214442761444287Coding
38. (GTG)41214464661446477Coding
39. (TGG)41214467161446727Coding
40. (GCT)41214538961453907Coding
41. (GAA)41214607211460732Coding
42. (TCG)41215326601532671Coding
43. (TTC)51515879091587923Coding
44. (GCT)41216341071634118Coding
45. (CCA)41216798001679811Coding
46. (CAG)41217019321701943Coding
47. (GAA)41217027491702760Coding
48. (CGC)41217681611768172Coding
49. (TCG)41217853981785409Coding
50. (CAG)41218240871824098Coding
51. (GGC)51518759651875979Coding
52. (CCA)41218821741882185Coding
53. (CAG)41219573691957380Coding
54. (ACC)41219701571970168Coding
55. (CAG)41219977801997791Coding
56. (ACA)41220525762052587Coding
57. (GAT)41221339962134007Coding
58. (ACG)51521627422162756Coding
59. (CCT)41222089022208913Coding
60. (GCA)41222435042243515Coding
61. (TGG)41222601172260128Coding
62. (TGG)41222622792262290Coding
63. (CGG)41222847362284747Coding
64. (GCC)41223190472319058Coding
65. (AGC)41223221172322128Coding
66. (CTG)41224180802418091Coding
67. (AAG)41224196042419615Coding
68. (AGA)72124196202419640Coding
69. (CCT)51524324062432420Coding
70. (GCT)41225239862523997Coding
71. (CGA)41225675902567601Non coding
72. (AGA)41225890692589080Coding
73. (GCC)51526057122605726Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.