CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9311 (NC_008319 2606749 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 142     Density of SSR      : 1SSR/ 18.23 kb   Average length of SSR  : 13.37 bp
Coding      : 124     Non-Coding           : 14   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 2 73 50 6 9 142
IMPERFECT 3 68 944 677 69 37 1798
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATC)3121437014381Coding
2. (GCTC)3125415154162Coding
3. (GCCT)312113922113933Coding
4. (AGTG)312142622142633Coding
5. (ACCA)312154002154013Coding
6. (CCAA)312215318215329Coding
7. (CTGG)312332136332147Coding
8. (GCTT)312368977368988Coding
9. (GATC)312443872443883Non coding
10. (GATC)312458262458273Coding
11. (TGAT)312497723497734Coding
12. (ATGG)312514170514181Non coding
13. (CTGC)312539645539656Coding
14. (TCCA)312543744543755Coding
15. (GTTG)312586522586533Non coding
16. (TTGG)312871464871475Coding
17. (GGTT)312920977920988Coding
18. (GATC)312959704959715Coding
19. (AATG)31210142241014235Coding-Non coding
20. (GATG)31210428061042817Non coding
21. (GCTT)31210449751044986Coding
22. (CCAG)31210638811063892Coding
23. (GTCA)31210969691096980Coding
24. (GAGC)31211449241144935Coding
25. (GTCA)31211792281179239Coding
26. (TTTC)31212079251207936Coding
27. (GATC)31212381691238180Coding
28. (CCAC)31212995781299589Coding
29. (AATA)31213471411347152Coding
30. (TCAT)31214237381423749Non coding
31. (TGCC)31214778521477863Coding
32. (GCCT)31214988921498903Coding
33. (CGTC)31215045231504534Coding
34. (TTCA)31215078791507890Non coding
35. (CAGC)31215373301537341Non coding
36. (CAAC)31215926131592624Coding
37. (ATGC)31216052541605265Coding
38. (ATCA)31216077721607783Coding-Non coding
39. (GCAA)41616197041619719Coding
40. (CAAG)31216421691642180Coding
41. (CGCT)31217560831756094Coding
42. (GGTC)31217983651798376Coding
43. (CAAA)31219582571958268Coding
44. (CAAG)31220019042001915Coding
45. (GAGT)31220711962071207Coding
46. (ATTA)31221102832110294Coding-Non coding
47. (GCCA)31222939662293977Coding
48. (ATCT)31224836662483677Coding
49. (CATG)31225504152550426Coding-Non coding
50. (AATG)31225825942582605Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.