CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9605 (NC_007516 2510660 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 14.51 kb   Average length of SSR  : 12.65 bp
Coding      : 161     Non-Coding           : 11   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 138 22 4 9 173
IMPERFECT 1 52 1467 606 88 66 2280
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCAACC)3181279812815Coding
2. (GGT)4121738817399Coding
3. (CAC)4122581625827Coding
4. (CAG)4122845928470Coding
5. (TGC)6183377033787Coding
6. (GGC)4124223042241Coding
7. (GCAGC)3154270142715Coding
8. (TGC)4124725847269Coding
9. (ACG)4125385953870Coding
10. (TGC)4125916059171Coding
11. (CGT)4126871468725Coding
12. (ACC)4127094970960Coding
13. (GGC)4127259972610Coding
14. (GCT)412101390101401Coding
15. (ATCG)312133161133172Coding
16. (CCA)412139282139293Coding
17. (ATTTT)315145568145582Coding
18. (CAGC)312151471151482Coding
19. (CAG)412167878167889Coding
20. (CAG)412169148169159Coding
21. (CCA)412216220216231Coding
22. (GGC)412216978216989Coding
23. (TGC)412248117248128Coding
24. (ACC)412260795260806Coding
25. (CAG)412282358282369Coding
26. (CTG)412288472288483Coding
27. (GGT)412304670304681Coding
28. (TCGCCG)318320038320055Coding
29. (CGA)412369975369986Coding
30. (GCTGAC)318371058371075Coding
31. (TCG)412382820382831Coding
32. (TCC)412393974393985Coding
33. (GCT)412438283438294Coding
34. (GTG)412448179448190Coding
35. (CTGC)312451701451712Non coding
36. (GGT)412462905462916Non coding
37. (GCT)412467807467818Coding
38. (TCTGG)315527464527478Coding
39. (GAGG)312534914534925Non coding
40. (CTT)412543475543486Coding
41. (AGC)618552526552543Coding
42. (TCG)412557922557933Coding
43. (TCC)412559155559166Coding
44. (GCA)618567423567440Coding
45. (CAG)412575234575245Coding
46. (GGT)412609196609207Coding
47. (TGG)412653943653954Coding
48. (CGC)412655947655958Coding
49. (GCA)412669312669323Coding
50. (GCG)412705291705302Coding
51. (GCC)515726918726932Coding
52. (CAG)412748314748325Non coding
53. (ACC)412754118754129Coding
54. (TGT)412758942758953Coding
55. (AGC)412760748760759Coding
56. (CAG)412763231763242Coding
57. (GCC)412765838765849Coding
58. (CGCCAG)318773551773568Coding
59. (CTGC)312776719776730Coding
60. (GCA)412811768811779Coding
61. (CGC)412845539845550Coding
62. (AAG)412854864854875Coding
63. (GCT)412888646888657Coding
64. (AGC)412890818890829Coding
65. (TTCATG)424896436896459Non coding
66. (CAG)41210122981012309Coding
67. (CCA)41210316891031700Coding
68. (CGG)41210545351054546Coding
69. (CAA)41210590281059039Coding
70. (CGC)41210682091068220Coding
71. (CGG)41210861581086169Coding
72. (GGCA)31211064631106474Coding
73. (GCT)41211110931111104Coding
74. (CAG)41211199331119944Coding
75. (GTC)41211388801138891Coding
76. (TGG)41211448331144844Coding
77. (ACA)41211584901158501Non coding
78. (CCA)41211881351188146Coding
79. (GGCC)31211933621193373Coding
80. (GCA)41211952781195289Coding
81. (CCG)51512123011212315Non coding
82. (ACCA)31212218121221823Coding
83. (GGA)41212598761259887Coding
84. (GATC)31212743031274314Coding
85. (TGC)41212785521278563Coding
86. (CAT)41213511831351194Coding
87. (CAG)41213720021372013Coding
88. (CAC)41213771741377185Coding
89. (CAG)41213842931384304Coding
90. (CGGC)31214113661411377Non coding
91. (GCC)41214116861411697Coding
92. (AGCC)31214352601435271Coding-Non coding
93. (CAA)41214402871440298Coding
94. (CCA)41214463571446368Coding
95. (CAC)41214801941480205Coding
96. (CAG)41214945351494546Coding
97. (CAC)41215108771510888Coding
98. (CAGGCC)31815119721511989Coding
99. (AGC)41215441661544177Coding
100. (GAT)41215572071557218Coding
101. (GAT)51515725361572550Coding
102. (GTCA)31215832521583263Non coding
103. (AGCCAA)31816134401613457Non coding
104. (GCC)41216169691616980Coding
105. (ATG)41216328451632856Non coding
106. (CAG)41216453871645398Coding
107. (TGC)41216460181646029Coding
108. (CCA)41216514851651496Coding
109. (ACC)41216516311651642Coding
110. (GGGC)31216590071659018Coding
111. (CAG)41216628001662811Coding
112. (CTG)41216742191674230Coding
113. (GCC)41216784631678474Coding
114. (CTG)41216784791678490Coding
115. (AGCC)31217074851707496Coding
116. (GCA)41217431941743205Coding
117. (CCA)41217791601779171Coding
118. (AGC)41218090311809042Coding
119. (GCT)41218121481812159Coding
120. (GCC)51518158561815870Coding
121. (GCT)41218295491829560Coding
122. (CCG)41218697341869745Coding
123. (CTC)41218813941881405Coding
124. (CGG)41218979661897977Coding
125. (CTT)41219216651921676Coding
126. (CGA)41219234961923507Coding
127. (CTG)41219235381923549Coding
128. (GCCGC)31519261351926149Coding
129. (CCAT)31219330241933035Coding
130. (CAG)41219365901936601Coding
131. (GCT)41219434161943427Coding
132. (TGG)41219440711944082Coding
133. (GCC)51519746811974695Coding
134. (TCGGCA)31820051692005186Coding
135. (CTG)41220136872013698Coding
136. (TGC)41220156772015688Coding
137. (TGGC)41620203962020411Coding
138. (GCC)41220352882035299Coding
139. (GCA)41220732282073239Coding
140. (GCAG)31221126332112644Coding
141. (TGC)41221200352120046Coding
142. (TGC)41221201702120181Coding
143. (GGCT)31221203832120394Coding
144. (CTG)41221220672122078Coding
145. (CGA)41221249632124974Coding
146. (GTG)41221507862150797Coding
147. (CGA)41221555902155601Coding
148. (TGG)41221643292164340Coding
149. (CGC)41221671822167193Coding
150. (CGA)41221688712168882Coding
151. (TGG)41221774102177421Coding
152. (TGG)41221791712179182Coding
153. (AGCACC)31821877782187795Coding
154. (GACC)31221977092197720Coding
155. (CTG)41222154092215420Coding
156. (GCC)41222320582232069Coding
157. (GCC)41222377522237763Coding
158. (CCT)41222390432239054Coding
159. (CTG)41222446262244637Coding
160. (CCG)41222467852246796Coding
161. (CAG)41222541532254164Coding
162. (CCA)41222546852254696Coding
163. (CAG)41222591012259112Coding
164. (CTG)41222609822260993Coding
165. (AGC)51522841052284119Coding
166. (TGG)41223036252303636Coding
167. (ACAG)31223132402313251Coding
168. (TGG)41223496692349680Coding
169. (CAAC)31224140562414067Coding
170. (CAGC)31224475422447553Coding
171. (GGC)41224545772454588Coding
172. (CCA)41224775262477537Coding
173. (CCA)41225032862503297Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.