CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9605 (NC_007516 2510660 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 14.51 kb   Average length of SSR  : 12.65 bp
Coding      : 161     Non-Coding           : 11   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 138 22 4 9 173
IMPERFECT 1 52 1467 606 88 66 2280
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGT)4121738817399Coding
2. (CAC)4122581625827Coding
3. (CAG)4122845928470Coding
4. (TGC)6183377033787Coding
5. (GGC)4124223042241Coding
6. (TGC)4124725847269Coding
7. (ACG)4125385953870Coding
8. (TGC)4125916059171Coding
9. (CGT)4126871468725Coding
10. (ACC)4127094970960Coding
11. (GGC)4127259972610Coding
12. (GCT)412101390101401Coding
13. (CCA)412139282139293Coding
14. (CAG)412167878167889Coding
15. (CAG)412169148169159Coding
16. (CCA)412216220216231Coding
17. (GGC)412216978216989Coding
18. (TGC)412248117248128Coding
19. (ACC)412260795260806Coding
20. (CAG)412282358282369Coding
21. (CTG)412288472288483Coding
22. (GGT)412304670304681Coding
23. (CGA)412369975369986Coding
24. (TCG)412382820382831Coding
25. (TCC)412393974393985Coding
26. (GCT)412438283438294Coding
27. (GTG)412448179448190Coding
28. (GGT)412462905462916Non coding
29. (GCT)412467807467818Coding
30. (CTT)412543475543486Coding
31. (AGC)618552526552543Coding
32. (TCG)412557922557933Coding
33. (TCC)412559155559166Coding
34. (GCA)618567423567440Coding
35. (CAG)412575234575245Coding
36. (GGT)412609196609207Coding
37. (TGG)412653943653954Coding
38. (CGC)412655947655958Coding
39. (GCA)412669312669323Coding
40. (GCG)412705291705302Coding
41. (GCC)515726918726932Coding
42. (CAG)412748314748325Non coding
43. (ACC)412754118754129Coding
44. (TGT)412758942758953Coding
45. (AGC)412760748760759Coding
46. (CAG)412763231763242Coding
47. (GCC)412765838765849Coding
48. (GCA)412811768811779Coding
49. (CGC)412845539845550Coding
50. (AAG)412854864854875Coding
51. (GCT)412888646888657Coding
52. (AGC)412890818890829Coding
53. (CAG)41210122981012309Coding
54. (CCA)41210316891031700Coding
55. (CGG)41210545351054546Coding
56. (CAA)41210590281059039Coding
57. (CGC)41210682091068220Coding
58. (CGG)41210861581086169Coding
59. (GCT)41211110931111104Coding
60. (CAG)41211199331119944Coding
61. (GTC)41211388801138891Coding
62. (TGG)41211448331144844Coding
63. (ACA)41211584901158501Non coding
64. (CCA)41211881351188146Coding
65. (GCA)41211952781195289Coding
66. (CCG)51512123011212315Non coding
67. (GGA)41212598761259887Coding
68. (TGC)41212785521278563Coding
69. (CAT)41213511831351194Coding
70. (CAG)41213720021372013Coding
71. (CAC)41213771741377185Coding
72. (CAG)41213842931384304Coding
73. (GCC)41214116861411697Coding
74. (CAA)41214402871440298Coding
75. (CCA)41214463571446368Coding
76. (CAC)41214801941480205Coding
77. (CAG)41214945351494546Coding
78. (CAC)41215108771510888Coding
79. (AGC)41215441661544177Coding
80. (GAT)41215572071557218Coding
81. (GAT)51515725361572550Coding
82. (GCC)41216169691616980Coding
83. (ATG)41216328451632856Non coding
84. (CAG)41216453871645398Coding
85. (TGC)41216460181646029Coding
86. (CCA)41216514851651496Coding
87. (ACC)41216516311651642Coding
88. (CAG)41216628001662811Coding
89. (CTG)41216742191674230Coding
90. (GCC)41216784631678474Coding
91. (CTG)41216784791678490Coding
92. (GCA)41217431941743205Coding
93. (CCA)41217791601779171Coding
94. (AGC)41218090311809042Coding
95. (GCT)41218121481812159Coding
96. (GCC)51518158561815870Coding
97. (GCT)41218295491829560Coding
98. (CCG)41218697341869745Coding
99. (CTC)41218813941881405Coding
100. (CGG)41218979661897977Coding
101. (CTT)41219216651921676Coding
102. (CGA)41219234961923507Coding
103. (CTG)41219235381923549Coding
104. (CAG)41219365901936601Coding
105. (GCT)41219434161943427Coding
106. (TGG)41219440711944082Coding
107. (GCC)51519746811974695Coding
108. (CTG)41220136872013698Coding
109. (TGC)41220156772015688Coding
110. (GCC)41220352882035299Coding
111. (GCA)41220732282073239Coding
112. (TGC)41221200352120046Coding
113. (TGC)41221201702120181Coding
114. (CTG)41221220672122078Coding
115. (CGA)41221249632124974Coding
116. (GTG)41221507862150797Coding
117. (CGA)41221555902155601Coding
118. (TGG)41221643292164340Coding
119. (CGC)41221671822167193Coding
120. (CGA)41221688712168882Coding
121. (TGG)41221774102177421Coding
122. (TGG)41221791712179182Coding
123. (CTG)41222154092215420Coding
124. (GCC)41222320582232069Coding
125. (GCC)41222377522237763Coding
126. (CCT)41222390432239054Coding
127. (CTG)41222446262244637Coding
128. (CCG)41222467852246796Coding
129. (CAG)41222541532254164Coding
130. (CCA)41222546852254696Coding
131. (CAG)41222591012259112Coding
132. (CTG)41222609822260993Coding
133. (AGC)51522841052284119Coding
134. (TGG)41223036252303636Coding
135. (TGG)41223496692349680Coding
136. (GGC)41224545772454588Coding
137. (CCA)41224775262477537Coding
138. (CCA)41225032862503297Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.