CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9605 (NC_007516 2510660 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 14.51 kb   Average length of SSR  : 12.65 bp
Coding      : 161     Non-Coding           : 11   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 138 22 4 9 173
IMPERFECT 1 52 1467 606 88 66 2280
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATCG)312133161133172Coding
2. (CAGC)312151471151482Coding
3. (CTGC)312451701451712Non coding
4. (GAGG)312534914534925Non coding
5. (CTGC)312776719776730Coding
6. (GGCA)31211064631106474Coding
7. (GGCC)31211933621193373Coding
8. (ACCA)31212218121221823Coding
9. (GATC)31212743031274314Coding
10. (CGGC)31214113661411377Non coding
11. (AGCC)31214352601435271Coding-Non coding
12. (GTCA)31215832521583263Non coding
13. (GGGC)31216590071659018Coding
14. (AGCC)31217074851707496Coding
15. (CCAT)31219330241933035Coding
16. (TGGC)41620203962020411Coding
17. (GCAG)31221126332112644Coding
18. (GGCT)31221203832120394Coding
19. (GACC)31221977092197720Coding
20. (ACAG)31223132402313251Coding
21. (CAAC)31224140562414067Coding
22. (CAGC)31224475422447553Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.