CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9902 (NC_007513 2234829 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 123     Density of SSR      : 1SSR/ 18.17 kb   Average length of SSR  : 12.44 bp
Coding      : 108     Non-Coding           : 13   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 86 29 6 2 123
IMPERFECT 0 42 844 532 51 32 1501
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)41245334544Coding
2. (GGC)4121733617347Coding
3. (GGC)4121739017401Coding
4. (CGG)7211746417484Coding
5. (GTC)4121758317594Coding
6. (TGG)4122308423095Coding
7. (TTCA)3122756227573Non coding
8. (GCA)4123886038871Coding
9. (TGGT)3124573045741Coding
10. (GTG)4126591565926Coding
11. (CAC)4126868668697Coding
12. (CAC)4127113971150Coding
13. (TGG)412113899113910Coding
14. (TAT)412136807136818Coding
15. (TTC)412137939137950Coding
16. (TGGC)312173052173063Coding
17. (CCA)412182162182173Coding
18. (GCCG)312193206193217Coding
19. (GGCT)312212870212881Coding
20. (GGA)412256670256681Coding
21. (GCT)412263730263741Coding
22. (GGC)412270231270242Coding
23. (GCC)412319748319759Coding
24. (CCA)412336355336366Coding
25. (CCA)412338114338125Coding
26. (GTC)412363863363874Coding
27. (GTC)412389588389599Coding
28. (GCA)412394412394423Coding
29. (TTGC)312394507394518Coding
30. (CCA)412402707402718Coding
31. (TGT)412466099466110Coding
32. (GATC)312488879488890Coding
33. (TGCCGA)318501902501919Coding
34. (GCA)412516108516119Coding
35. (TTG)412525903525914Coding
36. (CAC)412537543537554Coding
37. (GGGT)312537617537628Non coding
38. (CGC)412544110544121Coding
39. (TCT)412547737547748Non coding
40. (TGG)412549611549622Coding
41. (GCC)412559133559144Coding
42. (TTGCAG)318559946559963Coding
43. (GCG)412566865566876Coding
44. (GTTG)312591946591957Non coding
45. (GTG)412607456607467Coding
46. (TGC)412621867621878Coding
47. (CGT)412628788628799Coding
48. (GCT)412684368684379Coding
49. (GCA)515694811694825Coding
50. (TTC)412708438708449Coding
51. (GGT)412712381712392Coding
52. (CAC)412725953725964Coding
53. (TGT)412738941738952Coding
54. (TACT)312743210743221Coding
55. (GCC)412762266762277Coding
56. (GGAC)312785170785181Coding
57. (CTG)412785307785318Coding
58. (ATTG)312830385830396Coding
59. (CGAT)312838143838154Coding
60. (ATCCG)315849719849733Coding
61. (GGTG)312854032854043Coding
62. (CGG)412909232909243Coding
63. (TTAT)312975804975815Non coding
64. (TATT)312977585977596Non coding
65. (CTGGG)315980468980482Coding
66. (AATC)312990534990545Coding-Non coding
67. (TGAGC)315991167991181Coding
68. (TTGG)312994221994232Non coding
69. (GATT)31210220091022020Coding
70. (GTG)41210551751055186Coding
71. (CAG)41211111781111189Coding
72. (TGG)41211791311179142Coding
73. (TCG)41211812111181222Coding
74. (TGG)41212244591224470Coding
75. (TGCC)31212490101249021Coding
76. (GATC)31212740081274019Coding
77. (TGG)41212815061281517Coding
78. (CCA)41212871191287130Coding
79. (GTT)41212878521287863Coding
80. (CGA)41212948121294823Coding
81. (ACC)41213119961312007Coding
82. (ACG)41213267771326788Coding
83. (ACC)41213534421353453Coding
84. (CCA)41213684871368498Coding
85. (CCG)41213692831369294Coding
86. (TGC)41213720591372070Coding
87. (ACC)41214531571453168Coding
88. (CAG)41214653551465366Coding
89. (CAA)41214873111487322Coding
90. (TTGG)31214926931492704Coding
91. (AGA)41215024101502421Coding
92. (TCAAA)31515146381514652Coding
93. (ACA)41215272551527266Coding
94. (GGT)41215362841536295Coding
95. (AGC)41215462781546289Coding
96. (CAG)51515735521573566Coding
97. (CGGA)31216299141629925Coding
98. (TTCT)31216791701679181Coding
99. (CAG)51516990481699062Coding
100. (CAC)41217326961732707Non coding
101. (CCAAG)31517460251746039Coding
102. (CAG)41218077111807722Coding
103. (AATCC)31518373991837413Non coding
104. (TGC)41218538221853833Coding
105. (TGT)41218582001858211Coding
106. (AGC)41218634821863493Non coding
107. (GGC)61818772211877238Coding
108. (GTG)41218839321883943Coding
109. (GGC)41218857511885762Coding
110. (CCA)41219054381905449Coding
111. (AAAT)31219136601913671Non coding
112. (CCA)41219163251916336Coding
113. (CAAC)31219418241941835Coding
114. (CCA)41220325122032523Coding
115. (GGCC)31220393342039345Coding
116. (CTC)41220397452039756Coding
117. (AGCA)31220664332066444Coding
118. (CCG)41220763722076383Coding
119. (CAA)41220889352088946Non coding
120. (AAG)41221344832134494Non coding
121. (TGC)41221351512135162Coding
122. (TGAC)31222097922209803Coding-Non coding
123. (CTC)41222306542230665Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.