CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9902 (NC_007513 2234829 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 123     Density of SSR      : 1SSR/ 18.17 kb   Average length of SSR  : 12.44 bp
Coding      : 108     Non-Coding           : 13   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 86 29 6 2 123
IMPERFECT 0 42 844 532 51 32 1501
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)41245334544Coding
2. (GGC)4121733617347Coding
3. (GGC)4121739017401Coding
4. (CGG)7211746417484Coding
5. (GTC)4121758317594Coding
6. (TGG)4122308423095Coding
7. (GCA)4123886038871Coding
8. (GTG)4126591565926Coding
9. (CAC)4126868668697Coding
10. (CAC)4127113971150Coding
11. (TGG)412113899113910Coding
12. (TAT)412136807136818Coding
13. (TTC)412137939137950Coding
14. (CCA)412182162182173Coding
15. (GGA)412256670256681Coding
16. (GCT)412263730263741Coding
17. (GGC)412270231270242Coding
18. (GCC)412319748319759Coding
19. (CCA)412336355336366Coding
20. (CCA)412338114338125Coding
21. (GTC)412363863363874Coding
22. (GTC)412389588389599Coding
23. (GCA)412394412394423Coding
24. (CCA)412402707402718Coding
25. (TGT)412466099466110Coding
26. (GCA)412516108516119Coding
27. (TTG)412525903525914Coding
28. (CAC)412537543537554Coding
29. (CGC)412544110544121Coding
30. (TCT)412547737547748Non coding
31. (TGG)412549611549622Coding
32. (GCC)412559133559144Coding
33. (GCG)412566865566876Coding
34. (GTG)412607456607467Coding
35. (TGC)412621867621878Coding
36. (CGT)412628788628799Coding
37. (GCT)412684368684379Coding
38. (GCA)515694811694825Coding
39. (TTC)412708438708449Coding
40. (GGT)412712381712392Coding
41. (CAC)412725953725964Coding
42. (TGT)412738941738952Coding
43. (GCC)412762266762277Coding
44. (CTG)412785307785318Coding
45. (CGG)412909232909243Coding
46. (GTG)41210551751055186Coding
47. (CAG)41211111781111189Coding
48. (TGG)41211791311179142Coding
49. (TCG)41211812111181222Coding
50. (TGG)41212244591224470Coding
51. (TGG)41212815061281517Coding
52. (CCA)41212871191287130Coding
53. (GTT)41212878521287863Coding
54. (CGA)41212948121294823Coding
55. (ACC)41213119961312007Coding
56. (ACG)41213267771326788Coding
57. (ACC)41213534421353453Coding
58. (CCA)41213684871368498Coding
59. (CCG)41213692831369294Coding
60. (TGC)41213720591372070Coding
61. (ACC)41214531571453168Coding
62. (CAG)41214653551465366Coding
63. (CAA)41214873111487322Coding
64. (AGA)41215024101502421Coding
65. (ACA)41215272551527266Coding
66. (GGT)41215362841536295Coding
67. (AGC)41215462781546289Coding
68. (CAG)51515735521573566Coding
69. (CAG)51516990481699062Coding
70. (CAC)41217326961732707Non coding
71. (CAG)41218077111807722Coding
72. (TGC)41218538221853833Coding
73. (TGT)41218582001858211Coding
74. (AGC)41218634821863493Non coding
75. (GGC)61818772211877238Coding
76. (GTG)41218839321883943Coding
77. (GGC)41218857511885762Coding
78. (CCA)41219054381905449Coding
79. (CCA)41219163251916336Coding
80. (CCA)41220325122032523Coding
81. (CTC)41220397452039756Coding
82. (CCG)41220763722076383Coding
83. (CAA)41220889352088946Non coding
84. (AAG)41221344832134494Non coding
85. (TGC)41221351512135162Coding
86. (CTC)41222306542230665Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.