CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. CC9902 (NC_007513 2234829 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 123     Density of SSR      : 1SSR/ 18.17 kb   Average length of SSR  : 12.44 bp
Coding      : 108     Non-Coding           : 13   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 86 29 6 2 123
IMPERFECT 0 42 844 532 51 32 1501
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCA)3122756227573Non coding
2. (TGGT)3124573045741Coding
3. (TGGC)312173052173063Coding
4. (GCCG)312193206193217Coding
5. (GGCT)312212870212881Coding
6. (TTGC)312394507394518Coding
7. (GATC)312488879488890Coding
8. (GGGT)312537617537628Non coding
9. (GTTG)312591946591957Non coding
10. (TACT)312743210743221Coding
11. (GGAC)312785170785181Coding
12. (ATTG)312830385830396Coding
13. (CGAT)312838143838154Coding
14. (GGTG)312854032854043Coding
15. (TTAT)312975804975815Non coding
16. (TATT)312977585977596Non coding
17. (AATC)312990534990545Coding-Non coding
18. (TTGG)312994221994232Non coding
19. (GATT)31210220091022020Coding
20. (TGCC)31212490101249021Coding
21. (GATC)31212740081274019Coding
22. (TTGG)31214926931492704Coding
23. (CGGA)31216299141629925Coding
24. (TTCT)31216791701679181Coding
25. (AAAT)31219136601913671Non coding
26. (CAAC)31219418241941835Coding
27. (GGCC)31220393342039345Coding
28. (AGCA)31220664332066444Coding
29. (TGAC)31222097922209803Coding-Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.