CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. JA-2-3B'a(2-13) (NC_007776 3046683 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 170     Density of SSR      : 1SSR/ 17.92 kb   Average length of SSR  : 12.48 bp
Coding      : 154     Non-Coding           : 13   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 131 29 7 2 170
IMPERFECT 0 96 1424 656 115 94 2385
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGC)4123636136372Coding
2. (AGC)4124068740698Coding
3. (CCCA)312123286123297Coding
4. (CAG)412144290144301Coding
5. (CAG)412145150145161Coding
6. (CCA)412166314166325Coding
7. (CCGC)312182141182152Coding
8. (GTG)412184450184461Coding
9. (GGGCA)315192653192667Coding
10. (AGC)412200958200969Coding
11. (GGGCTA)318202835202852Coding
12. (GATG)312212618212629Coding-Non coding
13. (CGG)412226971226982Coding
14. (CCA)412229006229017Coding
15. (ACC)515229302229316Coding
16. (CTC)412249224249235Non coding
17. (CCA)412254021254032Coding
18. (CGG)515289771289785Coding
19. (CCA)412300285300296Coding
20. (CCCAC)315301602301616Coding
21. (GCA)412305350305361Coding
22. (CAG)412309975309986Coding
23. (CAG)412323817323828Coding
24. (GGT)412332759332770Coding
25. (CCA)412359399359410Coding
26. (GGCT)312392697392708Coding
27. (GGT)412411105411116Coding
28. (CTG)412460362460373Coding
29. (TGG)412462519462530Coding
30. (GGT)412465951465962Coding
31. (CCG)412473434473445Non coding
32. (CTA)515486882486896Coding
33. (TGG)515493250493264Coding
34. (GCCT)312555480555491Coding
35. (AAAC)312575023575034Coding-Non coding
36. (GCCC)416577431577446Coding
37. (GCG)412599977599988Coding
38. (CTA)412620248620259Coding
39. (CTG)412677077677088Non coding
40. (GAGG)312680983680994Non coding
41. (CAG)412728644728655Coding
42. (TCTG)312745980745991Coding
43. (GGT)412756537756548Coding
44. (GTG)412771681771692Coding
45. (CAC)515792765792779Coding
46. (CCCG)312807814807825Coding
47. (AGC)412830566830577Coding
48. (AGC)412855600855611Coding
49. (GCA)412875983875994Coding
50. (CAG)412888906888917Coding
51. (ACCC)312890571890582Coding
52. (ACC)412908451908462Coding
53. (CAG)412909549909560Coding
54. (ATTGA)315938142938156Non coding
55. (GGT)412946975946986Coding
56. (CAG)412967616967627Coding
57. (GGT)412972254972265Coding
58. (CCGC)312985764985775Coding
59. (CCA)41210239041023915Coding
60. (ACC)41210375461037557Coding
61. (CAG)41210796451079656Coding
62. (CAG)41210941321094143Coding
63. (GCC)41211101911110202Coding
64. (AGG)41211128761112887Coding
65. (CTG)41211339951134006Coding
66. (CAG)41211439771143988Coding
67. (CCG)41211757061175717Coding
68. (TAT)41211766781176689Non coding
69. (CGAC)31211770771177088Coding
70. (CAC)41211844761184487Coding
71. (CGC)41212418681241879Coding
72. (ACC)41212781371278148Coding
73. (CAC)41212914421291453Coding
74. (GGT)41213078631307874Coding
75. (CAG)41213080001308011Coding
76. (CTG)41213095601309571Coding
77. (CAG)41213355281335539Coding
78. (GGT)41213378811337892Coding
79. (CCG)41213713321371343Coding
80. (AGGC)31213820351382046Coding
81. (AGA)41214185421418553Non coding
82. (CTG)41214269421426953Coding
83. (CCA)41214350531435064Coding
84. (CAG)41214355521435563Coding
85. (CCCG)31214442421444253Coding
86. (CGCC)31214554831455494Coding
87. (CCA)41214945411494552Coding
88. (GGC)51515124311512445Coding
89. (GCT)41215816601581671Coding
90. (CTG)41215914851591496Coding
91. (TAG)41216167351616746Coding
92. (TGC)41216187711618782Coding
93. (CCA)51516496251649639Coding
94. (CTG)41216568051656816Coding
95. (GCA)41216580231658034Coding
96. (AACTC)31516615071661521Non coding
97. (CAG)41216712771671288Coding
98. (CGG)41216767551676766Coding
99. (CAG)51516946271694641Coding
100. (TGC)41217082351708246Coding
101. (CAG)41217386721738683Coding
102. (CCA)41217420441742055Coding
103. (GCCC)31217824251782436Coding
104. (CCGC)31218167461816757Coding
105. (CTG)41218180641818075Coding
106. (CCA)41218335601833571Coding
107. (TGG)41218373201837331Coding
108. (CGGGG)31518759801875994Coding
109. (GCA)41218820551882066Coding
110. (GCA)41218929621892973Coding
111. (GGT)41219439551943966Coding
112. (TGG)41219441311944142Coding
113. (CAG)51519674771967491Coding
114. (CCA)41219730611973072Coding
115. (AATA)31219922111992222Non coding
116. (CAG)41220440132044024Coding
117. (GCG)41220459872045998Coding
118. (GGT)41220785192078530Coding
119. (CAC)41220798062079817Coding
120. (CT)61220998532099864Non coding
121. (TGC)41221155592115570Coding
122. (CCAAC)31521814362181450Coding
123. (TTG)41221916122191623Non coding
124. (AGGG)31221933682193379Coding
125. (GCT)41222342072234218Coding
126. (CTG)41222402322240243Coding
127. (ACCG)31222461902246201Coding
128. (GGC)41222493752249386Coding
129. (CTG)51522507022250716Coding
130. (CTTC)31222946012294612Coding
131. (CAG)51523109922311006Coding
132. (GCA)41223716992371710Coding
133. (CAG)41223723272372338Coding
134. (TGG)51523926152392629Coding
135. (TGG)41223942582394269Coding
136. (GCT)41223960472396058Coding
137. (CCCA)31224142902414301Coding
138. (GGT)41224188452418856Coding
139. (TCTTTA)31824256362425653Non coding
140. (CTG)41224495172449528Coding
141. (CAG)41224564772456488Coding
142. (TATT)31224631562463167Coding-Non coding
143. (CTG)41224942742494285Coding
144. (CTG)41224959162495927Coding
145. (ATG)41226236932623704Coding
146. (TTC)41226260602626071Coding
147. (GCG)41226355612635572Coding
148. (GCT)41226579572657968Coding
149. (GGGT)31226881242688135Coding
150. (GCG)51527084012708415Coding
151. (GTT)41227122292712240Coding
152. (GATGG)31527162982716312Non coding
153. (CTG)41227221972722208Coding
154. (TTTC)31227361972736208Coding
155. (CCA)41227555502755561Coding
156. (TTGA)31227769242776935Coding
157. (CCCG)31227828702782881Coding
158. (GGT)41228018132801824Coding
159. (GGT)41228202912820302Coding
160. (CAG)41228539662853977Coding
161. (CAG)41228560122856023Coding
162. (GGT)51528846902884704Coding
163. (CGGG)31228980272898038Coding
164. (ACC)41229126902912701Coding
165. (CCA)41229164192916430Coding
166. (CAC)41229796962979707Coding
167. (TGG)41229969482996959Coding
168. (AGC)41230325473032558Coding
169. (CGG)51530349433034957Coding
170. (TGG)41230399503039961Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.