CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. JA-2-3B'a(2-13) (NC_007776 3046683 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 170     Density of SSR      : 1SSR/ 17.92 kb   Average length of SSR  : 12.48 bp
Coding      : 154     Non-Coding           : 13   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 131 29 7 2 170
IMPERFECT 0 96 1424 656 115 94 2385
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGC)4123636136372Coding
2. (AGC)4124068740698Coding
3. (CAG)412144290144301Coding
4. (CAG)412145150145161Coding
5. (CCA)412166314166325Coding
6. (GTG)412184450184461Coding
7. (AGC)412200958200969Coding
8. (CGG)412226971226982Coding
9. (CCA)412229006229017Coding
10. (ACC)515229302229316Coding
11. (CTC)412249224249235Non coding
12. (CCA)412254021254032Coding
13. (CGG)515289771289785Coding
14. (CCA)412300285300296Coding
15. (GCA)412305350305361Coding
16. (CAG)412309975309986Coding
17. (CAG)412323817323828Coding
18. (GGT)412332759332770Coding
19. (CCA)412359399359410Coding
20. (GGT)412411105411116Coding
21. (CTG)412460362460373Coding
22. (TGG)412462519462530Coding
23. (GGT)412465951465962Coding
24. (CCG)412473434473445Non coding
25. (CTA)515486882486896Coding
26. (TGG)515493250493264Coding
27. (GCG)412599977599988Coding
28. (CTA)412620248620259Coding
29. (CTG)412677077677088Non coding
30. (CAG)412728644728655Coding
31. (GGT)412756537756548Coding
32. (GTG)412771681771692Coding
33. (CAC)515792765792779Coding
34. (AGC)412830566830577Coding
35. (AGC)412855600855611Coding
36. (GCA)412875983875994Coding
37. (CAG)412888906888917Coding
38. (ACC)412908451908462Coding
39. (CAG)412909549909560Coding
40. (GGT)412946975946986Coding
41. (CAG)412967616967627Coding
42. (GGT)412972254972265Coding
43. (CCA)41210239041023915Coding
44. (ACC)41210375461037557Coding
45. (CAG)41210796451079656Coding
46. (CAG)41210941321094143Coding
47. (GCC)41211101911110202Coding
48. (AGG)41211128761112887Coding
49. (CTG)41211339951134006Coding
50. (CAG)41211439771143988Coding
51. (CCG)41211757061175717Coding
52. (TAT)41211766781176689Non coding
53. (CAC)41211844761184487Coding
54. (CGC)41212418681241879Coding
55. (ACC)41212781371278148Coding
56. (CAC)41212914421291453Coding
57. (GGT)41213078631307874Coding
58. (CAG)41213080001308011Coding
59. (CTG)41213095601309571Coding
60. (CAG)41213355281335539Coding
61. (GGT)41213378811337892Coding
62. (CCG)41213713321371343Coding
63. (AGA)41214185421418553Non coding
64. (CTG)41214269421426953Coding
65. (CCA)41214350531435064Coding
66. (CAG)41214355521435563Coding
67. (CCA)41214945411494552Coding
68. (GGC)51515124311512445Coding
69. (GCT)41215816601581671Coding
70. (CTG)41215914851591496Coding
71. (TAG)41216167351616746Coding
72. (TGC)41216187711618782Coding
73. (CCA)51516496251649639Coding
74. (CTG)41216568051656816Coding
75. (GCA)41216580231658034Coding
76. (CAG)41216712771671288Coding
77. (CGG)41216767551676766Coding
78. (CAG)51516946271694641Coding
79. (TGC)41217082351708246Coding
80. (CAG)41217386721738683Coding
81. (CCA)41217420441742055Coding
82. (CTG)41218180641818075Coding
83. (CCA)41218335601833571Coding
84. (TGG)41218373201837331Coding
85. (GCA)41218820551882066Coding
86. (GCA)41218929621892973Coding
87. (GGT)41219439551943966Coding
88. (TGG)41219441311944142Coding
89. (CAG)51519674771967491Coding
90. (CCA)41219730611973072Coding
91. (CAG)41220440132044024Coding
92. (GCG)41220459872045998Coding
93. (GGT)41220785192078530Coding
94. (CAC)41220798062079817Coding
95. (TGC)41221155592115570Coding
96. (TTG)41221916122191623Non coding
97. (GCT)41222342072234218Coding
98. (CTG)41222402322240243Coding
99. (GGC)41222493752249386Coding
100. (CTG)51522507022250716Coding
101. (CAG)51523109922311006Coding
102. (GCA)41223716992371710Coding
103. (CAG)41223723272372338Coding
104. (TGG)51523926152392629Coding
105. (TGG)41223942582394269Coding
106. (GCT)41223960472396058Coding
107. (GGT)41224188452418856Coding
108. (CTG)41224495172449528Coding
109. (CAG)41224564772456488Coding
110. (CTG)41224942742494285Coding
111. (CTG)41224959162495927Coding
112. (ATG)41226236932623704Coding
113. (TTC)41226260602626071Coding
114. (GCG)41226355612635572Coding
115. (GCT)41226579572657968Coding
116. (GCG)51527084012708415Coding
117. (GTT)41227122292712240Coding
118. (CTG)41227221972722208Coding
119. (CCA)41227555502755561Coding
120. (GGT)41228018132801824Coding
121. (GGT)41228202912820302Coding
122. (CAG)41228539662853977Coding
123. (CAG)41228560122856023Coding
124. (GGT)51528846902884704Coding
125. (ACC)41229126902912701Coding
126. (CCA)41229164192916430Coding
127. (CAC)41229796962979707Coding
128. (TGG)41229969482996959Coding
129. (AGC)41230325473032558Coding
130. (CGG)51530349433034957Coding
131. (TGG)41230399503039961Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.