CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. JA-2-3B'a(2-13) (NC_007776 3046683 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 170     Density of SSR      : 1SSR/ 17.92 kb   Average length of SSR  : 12.48 bp
Coding      : 154     Non-Coding           : 13   Coding and Non-Coding : 3
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 131 29 7 2 170
IMPERFECT 0 96 1424 656 115 94 2385
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCCA)312123286123297Coding
2. (CCGC)312182141182152Coding
3. (GATG)312212618212629Coding-Non coding
4. (GGCT)312392697392708Coding
5. (GCCT)312555480555491Coding
6. (AAAC)312575023575034Coding-Non coding
7. (GCCC)416577431577446Coding
8. (GAGG)312680983680994Non coding
9. (TCTG)312745980745991Coding
10. (CCCG)312807814807825Coding
11. (ACCC)312890571890582Coding
12. (CCGC)312985764985775Coding
13. (CGAC)31211770771177088Coding
14. (AGGC)31213820351382046Coding
15. (CCCG)31214442421444253Coding
16. (CGCC)31214554831455494Coding
17. (GCCC)31217824251782436Coding
18. (CCGC)31218167461816757Coding
19. (AATA)31219922111992222Non coding
20. (AGGG)31221933682193379Coding
21. (ACCG)31222461902246201Coding
22. (CTTC)31222946012294612Coding
23. (CCCA)31224142902414301Coding
24. (TATT)31224631562463167Coding-Non coding
25. (GGGT)31226881242688135Coding
26. (TTTC)31227361972736208Coding
27. (TTGA)31227769242776935Coding
28. (CCCG)31227828702782881Coding
29. (CGGG)31228980272898038Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.