CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. JA-3-3Ab (NC_007775 2932767 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 175     Density of SSR      : 1SSR/ 16.66 kb   Average length of SSR  : 12.69 bp
Coding      : 169     Non-Coding           : 6   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 129 36 4 4 175
IMPERFECT 0 66 1701 674 99 100 2640
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGAG)3122166921680Non coding
2. (TGG)5152987229886Coding
3. (TGG)4123140231413Coding
4. (CCA)4127508075091Coding
5. (GGC)4128661986630Coding
6. (GCCCG)3159211392127Coding
7. (CTG)4129454094551Coding
8. (GAGG)312109682109693Coding
9. (CGC)412118001118012Coding
10. (CGCC)312131638131649Coding
11. (TGG)412143596143607Coding
12. (CTG)515149176149190Coding
13. (CAG)412155983155994Coding
14. (CGCC)312175719175730Coding
15. (ATG)412177236177247Coding
16. (CTG)515193028193042Coding
17. (CGG)412193875193886Coding
18. (ACC)412194528194539Coding
19. (GGGC)312203936203947Coding
20. (CAC)412207269207280Coding
21. (TGC)412214129214140Coding
22. (GCT)412231026231037Coding
23. (CCG)412248868248879Coding
24. (ACCC)312251530251541Coding
25. (GCT)412268194268205Coding
26. (CCCG)312274102274113Coding
27. (GGC)412275416275427Coding
28. (GGC)412295370295381Coding
29. (AG)612299490299501Coding
30. (GCCCA)315300295300309Coding
31. (GTG)412310457310468Coding
32. (CGC)412340281340292Coding
33. (CGC)412355577355588Coding
34. (CAG)412357848357859Coding
35. (CCA)412392092392103Coding
36. (CCA)412392266392277Coding
37. (AGGG)312441206441217Coding
38. (GCCA)312483019483030Coding
39. (CTG)412536689536700Coding
40. (GGGC)416544294544309Coding
41. (GGCC)312567121567132Coding
42. (CAC)515568143568157Coding
43. (GTT)412586127586138Coding
44. (GGC)412600915600926Coding
45. (CGC)412636828636839Coding
46. (CAC)412643412643423Coding
47. (CCA)412658866658877Coding
48. (CTGG)312662382662393Coding
49. (TGC)412671877671888Coding
50. (CTG)412700782700793Coding
51. (CCA)412709837709848Coding
52. (ACC)412760425760436Coding
53. (GCGGA)315761509761523Coding
54. (GATG)312783948783959Coding-Non coding
55. (GCG)412787946787957Coding
56. (CCCG)312803821803832Coding
57. (ACC)412808506808517Coding
58. (GCC)412825159825170Coding
59. (GGC)412829806829817Coding
60. (CTG)515853754853768Coding
61. (GCC)412857626857637Coding
62. (CCAAA)315871974871988Coding
63. (GCG)412884589884600Coding
64. (GGC)412917816917827Coding
65. (TGG)412924706924717Coding
66. (AGCG)312933207933218Coding
67. (GGC)515952307952321Coding
68. (CCCG)312961532961543Coding
69. (CAC)41210176361017647Coding
70. (GTA)41210228011022812Coding
71. (GCC)41210631761063187Coding
72. (GCG)41210842181084229Coding
73. (CAG)51511030191103033Coding
74. (GCG)41211048881104899Coding
75. (GGC)41211183001118311Coding
76. (CCA)41211295631129574Coding
77. (CTG)51511374761137490Coding
78. (CCA)41211445411144552Coding
79. (GTG)41211584781158489Coding
80. (GAAA)31211676601167671Coding
81. (CCA)41211847671184778Coding
82. (TCTG)31212454611245472Coding
83. (TGC)41212497781249789Coding
84. (GCCC)31212737191273730Non coding
85. (GGT)41212805311280542Coding
86. (GCA)41212866151286626Coding
87. (GGT)41212960321296043Coding
88. (CTGG)31213259111325922Non coding
89. (AGC)41213278821327893Coding
90. (CGG)41213418691341880Coding
91. (TGC)41213842721384283Coding
92. (TGC)41213941811394192Coding
93. (GCT)41213944221394433Coding
94. (GGT)41214085701408581Coding
95. (CCG)41214289461428957Coding
96. (ACGCCC)31814357571435774Coding
97. (CCT)41214416511441662Coding
98. (GCA)41214532931453304Coding
99. (GGT)51514604281460442Coding
100. (GCGGGC)31814967921496809Coding
101. (CGCC)31215003431500354Coding
102. (GGC)41215038291503840Coding
103. (GCC)41215287301528741Coding
104. (GCC)41215371551537166Coding
105. (GCA)41215766061576617Coding
106. (GGCT)31215823941582405Coding
107. (CTAC)31215825031582514Coding
108. (GGT)41216000921600103Coding
109. (GCT)41216031231603134Coding
110. (CAG)41216112461611257Coding
111. (GCA)51516268881626902Coding
112. (CAG)41216344361634447Coding
113. (TAG)41216477911647802Non coding
114. (GCA)41216763121676323Coding
115. (CCA)41217184071718418Coding
116. (GGT)51517516261751640Coding
117. (GGT)41217519231751934Coding
118. (GCC)41217541301754141Coding
119. (G)141417760441776057Coding
120. (CCA)41218486961848707Coding
121. (TAGC)31218623891862400Coding
122. (TGG)41218677581867769Coding
123. (TGCC)31218929511892962Coding
124. (TGC)41219312391931250Coding
125. (CTGG)31219460391946050Non coding
126. (AGC)41219798901979901Coding
127. (CAC)41219842901984301Coding
128. (GCC)41219853941985405Coding
129. (CAC)41220017662001777Coding
130. (CAC)41220321022032113Coding
131. (CAG)41220396502039661Coding
132. (CCG)41220442172044228Coding
133. (GTG)41220481702048181Coding
134. (GTG)41220768252076836Coding
135. (TGGC)31220802362080247Coding
136. (AGAGCC)31821087942108811Coding
137. (CGG)41221157122115723Coding
138. (CCA)41221242242124235Coding
139. (GCT)41221284082128419Coding
140. (CTG)41221635652163576Coding
141. (GCCC)31221890092189020Coding
142. (GCC)41222058992205910Coding
143. (AAG)41222237202223731Coding
144. (GAGC)31222460392246050Coding
145. (CCA)41222794832279494Coding
146. (GCCC)41622891212289136Coding
147. (GTG)51523478602347874Coding
148. (TGC)41223576352357646Coding
149. (CTG)41223649982365009Coding
150. (CTGC)31223773142377325Non coding
151. (CTG)41223783962378407Coding
152. (GGCA)31223829202382931Coding
153. (GCCC)41624180252418040Coding
154. (CCG)41224530162453027Coding
155. (CTG)41224642352464246Coding
156. (GCA)41225115542511565Coding
157. (GCG)41225785292578540Coding
158. (CTG)41225964012596412Coding
159. (GCCC)31225978472597858Coding
160. (CTG)41226011852601196Coding
161. (CGC)51526081912608205Coding
162. (GCA)41226220932622104Coding
163. (CAG)41226227212622732Coding
164. (CGCTCC)31826425302642547Coding
165. (AGC)41226570832657094Coding
166. (CAG)41226631802663191Coding
167. (CCG)41226725102672521Coding
168. (CCG)41227213272721338Coding
169. (CAC)41227214632721474Coding
170. (GCC)51528083892808403Coding
171. (CGC)41228976302897641Coding
172. (CTG)41228979762897987Coding
173. (CCTC)31229059642905975Coding
174. (GGGC)52029301052930124Coding
175. (CCG)41229324882932499Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.