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Organism:
Synechococcus sp. JA-3-3Ab
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(NC_007775 , 2932767 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
0
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Overlapping Compound
:
1
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Perfect
:
175
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Density of SSR
:
1SSR/
16.66
kb
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Average length of SSR
:
12.69
bp
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Coding
:
169
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Non-Coding
:
6
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Coding and Non-Coding
:
1
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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1
|
1
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129
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36
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4
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4
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175
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (TGAG)3 | 12 | 21669 | 21680 | Non coding |
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2.
| (TGG)5 | 15 | 29872 | 29886 | Coding |
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3.
| (TGG)4 | 12 | 31402 | 31413 | Coding |
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4.
| (CCA)4 | 12 | 75080 | 75091 | Coding |
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5.
| (GGC)4 | 12 | 86619 | 86630 | Coding |
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6.
| (GCCCG)3 | 15 | 92113 | 92127 | Coding |
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7.
| (CTG)4 | 12 | 94540 | 94551 | Coding |
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8.
| (GAGG)3 | 12 | 109682 | 109693 | Coding |
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9.
| (CGC)4 | 12 | 118001 | 118012 | Coding |
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10.
| (CGCC)3 | 12 | 131638 | 131649 | Coding |
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11.
| (TGG)4 | 12 | 143596 | 143607 | Coding |
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12.
| (CTG)5 | 15 | 149176 | 149190 | Coding |
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13.
| (CAG)4 | 12 | 155983 | 155994 | Coding |
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14.
| (CGCC)3 | 12 | 175719 | 175730 | Coding |
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15.
| (ATG)4 | 12 | 177236 | 177247 | Coding |
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16.
| (CTG)5 | 15 | 193028 | 193042 | Coding |
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17.
| (CGG)4 | 12 | 193875 | 193886 | Coding |
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18.
| (ACC)4 | 12 | 194528 | 194539 | Coding |
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19.
| (GGGC)3 | 12 | 203936 | 203947 | Coding |
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20.
| (CAC)4 | 12 | 207269 | 207280 | Coding |
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21.
| (TGC)4 | 12 | 214129 | 214140 | Coding |
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22.
| (GCT)4 | 12 | 231026 | 231037 | Coding |
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23.
| (CCG)4 | 12 | 248868 | 248879 | Coding |
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24.
| (ACCC)3 | 12 | 251530 | 251541 | Coding |
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25.
| (GCT)4 | 12 | 268194 | 268205 | Coding |
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26.
| (CCCG)3 | 12 | 274102 | 274113 | Coding |
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27.
| (GGC)4 | 12 | 275416 | 275427 | Coding |
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28.
| (GGC)4 | 12 | 295370 | 295381 | Coding |
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29.
| (AG)6 | 12 | 299490 | 299501 | Coding |
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30.
| (GCCCA)3 | 15 | 300295 | 300309 | Coding |
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31.
| (GTG)4 | 12 | 310457 | 310468 | Coding |
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32.
| (CGC)4 | 12 | 340281 | 340292 | Coding |
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33.
| (CGC)4 | 12 | 355577 | 355588 | Coding |
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34.
| (CAG)4 | 12 | 357848 | 357859 | Coding |
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35.
| (CCA)4 | 12 | 392092 | 392103 | Coding |
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36.
| (CCA)4 | 12 | 392266 | 392277 | Coding |
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37.
| (AGGG)3 | 12 | 441206 | 441217 | Coding |
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38.
| (GCCA)3 | 12 | 483019 | 483030 | Coding |
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39.
| (CTG)4 | 12 | 536689 | 536700 | Coding |
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40.
| (GGGC)4 | 16 | 544294 | 544309 | Coding |
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41.
| (GGCC)3 | 12 | 567121 | 567132 | Coding |
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42.
| (CAC)5 | 15 | 568143 | 568157 | Coding |
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43.
| (GTT)4 | 12 | 586127 | 586138 | Coding |
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44.
| (GGC)4 | 12 | 600915 | 600926 | Coding |
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45.
| (CGC)4 | 12 | 636828 | 636839 | Coding |
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46.
| (CAC)4 | 12 | 643412 | 643423 | Coding |
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47.
| (CCA)4 | 12 | 658866 | 658877 | Coding |
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48.
| (CTGG)3 | 12 | 662382 | 662393 | Coding |
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49.
| (TGC)4 | 12 | 671877 | 671888 | Coding |
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50.
| (CTG)4 | 12 | 700782 | 700793 | Coding |
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51.
| (CCA)4 | 12 | 709837 | 709848 | Coding |
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52.
| (ACC)4 | 12 | 760425 | 760436 | Coding |
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53.
| (GCGGA)3 | 15 | 761509 | 761523 | Coding |
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54.
| (GATG)3 | 12 | 783948 | 783959 | Coding-Non coding |
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55.
| (GCG)4 | 12 | 787946 | 787957 | Coding |
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56.
| (CCCG)3 | 12 | 803821 | 803832 | Coding |
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57.
| (ACC)4 | 12 | 808506 | 808517 | Coding |
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58.
| (GCC)4 | 12 | 825159 | 825170 | Coding |
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59.
| (GGC)4 | 12 | 829806 | 829817 | Coding |
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60.
| (CTG)5 | 15 | 853754 | 853768 | Coding |
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61.
| (GCC)4 | 12 | 857626 | 857637 | Coding |
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62.
| (CCAAA)3 | 15 | 871974 | 871988 | Coding |
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63.
| (GCG)4 | 12 | 884589 | 884600 | Coding |
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64.
| (GGC)4 | 12 | 917816 | 917827 | Coding |
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65.
| (TGG)4 | 12 | 924706 | 924717 | Coding |
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66.
| (AGCG)3 | 12 | 933207 | 933218 | Coding |
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67.
| (GGC)5 | 15 | 952307 | 952321 | Coding |
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68.
| (CCCG)3 | 12 | 961532 | 961543 | Coding |
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69.
| (CAC)4 | 12 | 1017636 | 1017647 | Coding |
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70.
| (GTA)4 | 12 | 1022801 | 1022812 | Coding |
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71.
| (GCC)4 | 12 | 1063176 | 1063187 | Coding |
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72.
| (GCG)4 | 12 | 1084218 | 1084229 | Coding |
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73.
| (CAG)5 | 15 | 1103019 | 1103033 | Coding |
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74.
| (GCG)4 | 12 | 1104888 | 1104899 | Coding |
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75.
| (GGC)4 | 12 | 1118300 | 1118311 | Coding |
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76.
| (CCA)4 | 12 | 1129563 | 1129574 | Coding |
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77.
| (CTG)5 | 15 | 1137476 | 1137490 | Coding |
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78.
| (CCA)4 | 12 | 1144541 | 1144552 | Coding |
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79.
| (GTG)4 | 12 | 1158478 | 1158489 | Coding |
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80.
| (GAAA)3 | 12 | 1167660 | 1167671 | Coding |
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81.
| (CCA)4 | 12 | 1184767 | 1184778 | Coding |
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82.
| (TCTG)3 | 12 | 1245461 | 1245472 | Coding |
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83.
| (TGC)4 | 12 | 1249778 | 1249789 | Coding |
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84.
| (GCCC)3 | 12 | 1273719 | 1273730 | Non coding |
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85.
| (GGT)4 | 12 | 1280531 | 1280542 | Coding |
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86.
| (GCA)4 | 12 | 1286615 | 1286626 | Coding |
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87.
| (GGT)4 | 12 | 1296032 | 1296043 | Coding |
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88.
| (CTGG)3 | 12 | 1325911 | 1325922 | Non coding |
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89.
| (AGC)4 | 12 | 1327882 | 1327893 | Coding |
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90.
| (CGG)4 | 12 | 1341869 | 1341880 | Coding |
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91.
| (TGC)4 | 12 | 1384272 | 1384283 | Coding |
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92.
| (TGC)4 | 12 | 1394181 | 1394192 | Coding |
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93.
| (GCT)4 | 12 | 1394422 | 1394433 | Coding |
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94.
| (GGT)4 | 12 | 1408570 | 1408581 | Coding |
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95.
| (CCG)4 | 12 | 1428946 | 1428957 | Coding |
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96.
| (ACGCCC)3 | 18 | 1435757 | 1435774 | Coding |
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97.
| (CCT)4 | 12 | 1441651 | 1441662 | Coding |
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98.
| (GCA)4 | 12 | 1453293 | 1453304 | Coding |
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99.
| (GGT)5 | 15 | 1460428 | 1460442 | Coding |
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100.
| (GCGGGC)3 | 18 | 1496792 | 1496809 | Coding |
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101.
| (CGCC)3 | 12 | 1500343 | 1500354 | Coding |
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102.
| (GGC)4 | 12 | 1503829 | 1503840 | Coding |
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103.
| (GCC)4 | 12 | 1528730 | 1528741 | Coding |
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104.
| (GCC)4 | 12 | 1537155 | 1537166 | Coding |
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105.
| (GCA)4 | 12 | 1576606 | 1576617 | Coding |
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106.
| (GGCT)3 | 12 | 1582394 | 1582405 | Coding |
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107.
| (CTAC)3 | 12 | 1582503 | 1582514 | Coding |
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108.
| (GGT)4 | 12 | 1600092 | 1600103 | Coding |
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109.
| (GCT)4 | 12 | 1603123 | 1603134 | Coding |
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110.
| (CAG)4 | 12 | 1611246 | 1611257 | Coding |
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111.
| (GCA)5 | 15 | 1626888 | 1626902 | Coding |
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112.
| (CAG)4 | 12 | 1634436 | 1634447 | Coding |
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113.
| (TAG)4 | 12 | 1647791 | 1647802 | Non coding |
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114.
| (GCA)4 | 12 | 1676312 | 1676323 | Coding |
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115.
| (CCA)4 | 12 | 1718407 | 1718418 | Coding |
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116.
| (GGT)5 | 15 | 1751626 | 1751640 | Coding |
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117.
| (GGT)4 | 12 | 1751923 | 1751934 | Coding |
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118.
| (GCC)4 | 12 | 1754130 | 1754141 | Coding |
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119.
| (G)14 | 14 | 1776044 | 1776057 | Coding |
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120.
| (CCA)4 | 12 | 1848696 | 1848707 | Coding |
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121.
| (TAGC)3 | 12 | 1862389 | 1862400 | Coding |
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122.
| (TGG)4 | 12 | 1867758 | 1867769 | Coding |
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123.
| (TGCC)3 | 12 | 1892951 | 1892962 | Coding |
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124.
| (TGC)4 | 12 | 1931239 | 1931250 | Coding |
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125.
| (CTGG)3 | 12 | 1946039 | 1946050 | Non coding |
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126.
| (AGC)4 | 12 | 1979890 | 1979901 | Coding |
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127.
| (CAC)4 | 12 | 1984290 | 1984301 | Coding |
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128.
| (GCC)4 | 12 | 1985394 | 1985405 | Coding |
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129.
| (CAC)4 | 12 | 2001766 | 2001777 | Coding |
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130.
| (CAC)4 | 12 | 2032102 | 2032113 | Coding |
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131.
| (CAG)4 | 12 | 2039650 | 2039661 | Coding |
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132.
| (CCG)4 | 12 | 2044217 | 2044228 | Coding |
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133.
| (GTG)4 | 12 | 2048170 | 2048181 | Coding |
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134.
| (GTG)4 | 12 | 2076825 | 2076836 | Coding |
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135.
| (TGGC)3 | 12 | 2080236 | 2080247 | Coding |
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136.
| (AGAGCC)3 | 18 | 2108794 | 2108811 | Coding |
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137.
| (CGG)4 | 12 | 2115712 | 2115723 | Coding |
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138.
| (CCA)4 | 12 | 2124224 | 2124235 | Coding |
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139.
| (GCT)4 | 12 | 2128408 | 2128419 | Coding |
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140.
| (CTG)4 | 12 | 2163565 | 2163576 | Coding |
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141.
| (GCCC)3 | 12 | 2189009 | 2189020 | Coding |
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142.
| (GCC)4 | 12 | 2205899 | 2205910 | Coding |
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143.
| (AAG)4 | 12 | 2223720 | 2223731 | Coding |
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144.
| (GAGC)3 | 12 | 2246039 | 2246050 | Coding |
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145.
| (CCA)4 | 12 | 2279483 | 2279494 | Coding |
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146.
| (GCCC)4 | 16 | 2289121 | 2289136 | Coding |
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147.
| (GTG)5 | 15 | 2347860 | 2347874 | Coding |
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148.
| (TGC)4 | 12 | 2357635 | 2357646 | Coding |
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149.
| (CTG)4 | 12 | 2364998 | 2365009 | Coding |
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150.
| (CTGC)3 | 12 | 2377314 | 2377325 | Non coding |
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151.
| (CTG)4 | 12 | 2378396 | 2378407 | Coding |
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152.
| (GGCA)3 | 12 | 2382920 | 2382931 | Coding |
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153.
| (GCCC)4 | 16 | 2418025 | 2418040 | Coding |
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154.
| (CCG)4 | 12 | 2453016 | 2453027 | Coding |
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155.
| (CTG)4 | 12 | 2464235 | 2464246 | Coding |
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156.
| (GCA)4 | 12 | 2511554 | 2511565 | Coding |
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157.
| (GCG)4 | 12 | 2578529 | 2578540 | Coding |
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158.
| (CTG)4 | 12 | 2596401 | 2596412 | Coding |
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159.
| (GCCC)3 | 12 | 2597847 | 2597858 | Coding |
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160.
| (CTG)4 | 12 | 2601185 | 2601196 | Coding |
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161.
| (CGC)5 | 15 | 2608191 | 2608205 | Coding |
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162.
| (GCA)4 | 12 | 2622093 | 2622104 | Coding |
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163.
| (CAG)4 | 12 | 2622721 | 2622732 | Coding |
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164.
| (CGCTCC)3 | 18 | 2642530 | 2642547 | Coding |
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165.
| (AGC)4 | 12 | 2657083 | 2657094 | Coding |
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166.
| (CAG)4 | 12 | 2663180 | 2663191 | Coding |
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167.
| (CCG)4 | 12 | 2672510 | 2672521 | Coding |
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168.
| (CCG)4 | 12 | 2721327 | 2721338 | Coding |
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169.
| (CAC)4 | 12 | 2721463 | 2721474 | Coding |
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170.
| (GCC)5 | 15 | 2808389 | 2808403 | Coding |
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171.
| (CGC)4 | 12 | 2897630 | 2897641 | Coding |
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172.
| (CTG)4 | 12 | 2897976 | 2897987 | Coding |
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173.
| (CCTC)3 | 12 | 2905964 | 2905975 | Coding |
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174.
| (GGGC)5 | 20 | 2930105 | 2930124 | Coding |
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175.
| (CCG)4 | 12 | 2932488 | 2932499 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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