CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. JA-3-3Ab (NC_007775 2932767 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 175     Density of SSR      : 1SSR/ 16.66 kb   Average length of SSR  : 12.69 bp
Coding      : 169     Non-Coding           : 6   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 129 36 4 4 175
IMPERFECT 0 66 1701 674 99 100 2640
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGG)5152987229886Coding
2. (TGG)4123140231413Coding
3. (CCA)4127508075091Coding
4. (GGC)4128661986630Coding
5. (CTG)4129454094551Coding
6. (CGC)412118001118012Coding
7. (TGG)412143596143607Coding
8. (CTG)515149176149190Coding
9. (CAG)412155983155994Coding
10. (ATG)412177236177247Coding
11. (CTG)515193028193042Coding
12. (CGG)412193875193886Coding
13. (ACC)412194528194539Coding
14. (CAC)412207269207280Coding
15. (TGC)412214129214140Coding
16. (GCT)412231026231037Coding
17. (CCG)412248868248879Coding
18. (GCT)412268194268205Coding
19. (GGC)412275416275427Coding
20. (GGC)412295370295381Coding
21. (GTG)412310457310468Coding
22. (CGC)412340281340292Coding
23. (CGC)412355577355588Coding
24. (CAG)412357848357859Coding
25. (CCA)412392092392103Coding
26. (CCA)412392266392277Coding
27. (CTG)412536689536700Coding
28. (CAC)515568143568157Coding
29. (GTT)412586127586138Coding
30. (GGC)412600915600926Coding
31. (CGC)412636828636839Coding
32. (CAC)412643412643423Coding
33. (CCA)412658866658877Coding
34. (TGC)412671877671888Coding
35. (CTG)412700782700793Coding
36. (CCA)412709837709848Coding
37. (ACC)412760425760436Coding
38. (GCG)412787946787957Coding
39. (ACC)412808506808517Coding
40. (GCC)412825159825170Coding
41. (GGC)412829806829817Coding
42. (CTG)515853754853768Coding
43. (GCC)412857626857637Coding
44. (GCG)412884589884600Coding
45. (GGC)412917816917827Coding
46. (TGG)412924706924717Coding
47. (GGC)515952307952321Coding
48. (CAC)41210176361017647Coding
49. (GTA)41210228011022812Coding
50. (GCC)41210631761063187Coding
51. (GCG)41210842181084229Coding
52. (CAG)51511030191103033Coding
53. (GCG)41211048881104899Coding
54. (GGC)41211183001118311Coding
55. (CCA)41211295631129574Coding
56. (CTG)51511374761137490Coding
57. (CCA)41211445411144552Coding
58. (GTG)41211584781158489Coding
59. (CCA)41211847671184778Coding
60. (TGC)41212497781249789Coding
61. (GGT)41212805311280542Coding
62. (GCA)41212866151286626Coding
63. (GGT)41212960321296043Coding
64. (AGC)41213278821327893Coding
65. (CGG)41213418691341880Coding
66. (TGC)41213842721384283Coding
67. (TGC)41213941811394192Coding
68. (GCT)41213944221394433Coding
69. (GGT)41214085701408581Coding
70. (CCG)41214289461428957Coding
71. (CCT)41214416511441662Coding
72. (GCA)41214532931453304Coding
73. (GGT)51514604281460442Coding
74. (GGC)41215038291503840Coding
75. (GCC)41215287301528741Coding
76. (GCC)41215371551537166Coding
77. (GCA)41215766061576617Coding
78. (GGT)41216000921600103Coding
79. (GCT)41216031231603134Coding
80. (CAG)41216112461611257Coding
81. (GCA)51516268881626902Coding
82. (CAG)41216344361634447Coding
83. (TAG)41216477911647802Non coding
84. (GCA)41216763121676323Coding
85. (CCA)41217184071718418Coding
86. (GGT)51517516261751640Coding
87. (GGT)41217519231751934Coding
88. (GCC)41217541301754141Coding
89. (CCA)41218486961848707Coding
90. (TGG)41218677581867769Coding
91. (TGC)41219312391931250Coding
92. (AGC)41219798901979901Coding
93. (CAC)41219842901984301Coding
94. (GCC)41219853941985405Coding
95. (CAC)41220017662001777Coding
96. (CAC)41220321022032113Coding
97. (CAG)41220396502039661Coding
98. (CCG)41220442172044228Coding
99. (GTG)41220481702048181Coding
100. (GTG)41220768252076836Coding
101. (CGG)41221157122115723Coding
102. (CCA)41221242242124235Coding
103. (GCT)41221284082128419Coding
104. (CTG)41221635652163576Coding
105. (GCC)41222058992205910Coding
106. (AAG)41222237202223731Coding
107. (CCA)41222794832279494Coding
108. (GTG)51523478602347874Coding
109. (TGC)41223576352357646Coding
110. (CTG)41223649982365009Coding
111. (CTG)41223783962378407Coding
112. (CCG)41224530162453027Coding
113. (CTG)41224642352464246Coding
114. (GCA)41225115542511565Coding
115. (GCG)41225785292578540Coding
116. (CTG)41225964012596412Coding
117. (CTG)41226011852601196Coding
118. (CGC)51526081912608205Coding
119. (GCA)41226220932622104Coding
120. (CAG)41226227212622732Coding
121. (AGC)41226570832657094Coding
122. (CAG)41226631802663191Coding
123. (CCG)41226725102672521Coding
124. (CCG)41227213272721338Coding
125. (CAC)41227214632721474Coding
126. (GCC)51528083892808403Coding
127. (CGC)41228976302897641Coding
128. (CTG)41228979762897987Coding
129. (CCG)41229324882932499Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.