CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. JA-3-3Ab (NC_007775 2932767 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 175     Density of SSR      : 1SSR/ 16.66 kb   Average length of SSR  : 12.69 bp
Coding      : 169     Non-Coding           : 6   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 129 36 4 4 175
IMPERFECT 0 66 1701 674 99 100 2640
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGAG)3122166921680Non coding
2. (GAGG)312109682109693Coding
3. (CGCC)312131638131649Coding
4. (CGCC)312175719175730Coding
5. (GGGC)312203936203947Coding
6. (ACCC)312251530251541Coding
7. (CCCG)312274102274113Coding
8. (AGGG)312441206441217Coding
9. (GCCA)312483019483030Coding
10. (GGGC)416544294544309Coding
11. (GGCC)312567121567132Coding
12. (CTGG)312662382662393Coding
13. (GATG)312783948783959Coding-Non coding
14. (CCCG)312803821803832Coding
15. (AGCG)312933207933218Coding
16. (CCCG)312961532961543Coding
17. (GAAA)31211676601167671Coding
18. (TCTG)31212454611245472Coding
19. (GCCC)31212737191273730Non coding
20. (CTGG)31213259111325922Non coding
21. (CGCC)31215003431500354Coding
22. (GGCT)31215823941582405Coding
23. (CTAC)31215825031582514Coding
24. (TAGC)31218623891862400Coding
25. (TGCC)31218929511892962Coding
26. (CTGG)31219460391946050Non coding
27. (TGGC)31220802362080247Coding
28. (GCCC)31221890092189020Coding
29. (GAGC)31222460392246050Coding
30. (GCCC)41622891212289136Coding
31. (CTGC)31223773142377325Non coding
32. (GGCA)31223829202382931Coding
33. (GCCC)41624180252418040Coding
34. (GCCC)31225978472597858Coding
35. (CCTC)31229059642905975Coding
36. (GGGC)52029301052930124Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.