CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 6312 (NC_019680 3697277 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 160     Density of SSR      : 1SSR/ 23.11 kb   Average length of SSR  : 12.59 bp
Coding      : 132     Non-Coding           : 27   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 78 64 11 4 160
IMPERFECT 0 70 941 747 101 75 1934
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTA)41217661777Non coding
2. (CAG)4121838518396Coding
3. (CTG)5151983919853Coding
4. (GGC)412122626122637Coding
5. (CT)612129747129758Coding
6. (GCC)412137753137764Coding
7. (TCTA)312159202159213Non coding
8. (TGGT)312162342162353Coding
9. (TGAT)416211883211898Coding
10. (CCAG)312227056227067Coding
11. (GCG)412247335247346Coding
12. (GCC)412273300273311Coding
13. (CGG)412285725285736Coding
14. (GAG)412287238287249Coding
15. (GGTT)312297058297069Non coding
16. (TTGGGC)318307241307258Coding
17. (GCC)412309431309442Coding
18. (AACC)312349350349361Coding
19. (TGA)412367867367878Non coding
20. (GCA)412373059373070Coding
21. (CTG)515387515387529Coding
22. (GGC)412397105397116Coding
23. (GTG)412536238536249Coding
24. (GAC)412538318538329Coding
25. (GCC)515540633540647Coding
26. (CGGC)312569167569178Coding
27. (GTG)412574968574979Coding
28. (GGGT)416581060581075Coding
29. (ACTG)312639030639041Coding
30. (GGGT)312649018649029Coding
31. (GTGA)312651765651776Non coding
32. (GTG)412665009665020Coding
33. (TGG)412671885671896Coding
34. (TCCA)312764387764398Coding
35. (ACCC)312772503772514Coding
36. (TGAAC)315802507802521Coding
37. (CCCA)312816965816976Coding
38. (AGGGTT)318839608839625Coding-Non coding
39. (CGG)412875877875888Coding
40. (GCC)412915073915084Coding
41. (CTG)412932715932726Coding
42. (GGTT)312959897959908Coding
43. (GGCT)312968331968342Coding
44. (GCCG)31210159371015948Coding
45. (TTGA)31210712161071227Coding
46. (ATTT)31211014771101488Coding
47. (GGC)41211166341116645Coding
48. (AAG)41211327731132784Coding
49. (CTT)41211543671154378Coding
50. (CCAG)31211938401193851Coding
51. (CAA)41212263111226322Coding
52. (CAA)41212414561241467Coding
53. (TTG)41212679081267919Non coding
54. (AGCCA)31512679671267981Coding
55. (ATTT)31212870931287104Non coding
56. (TCCG)31212997301299741Non coding
57. (ATT)41213122711312282Coding
58. (AGA)41213367121336723Coding
59. (TA)61213425181342529Non coding
60. (CAAC)31213999401399951Coding
61. (CTGG)31214095131409524Coding
62. (CCAA)31214605111460522Coding
63. (GCC)41214608001460811Coding
64. (CCG)51514930411493055Coding
65. (CTGG)31214971521497163Coding
66. (CCCG)31214976081497619Coding
67. (AAC)41214997361499747Coding
68. (GGC)41215404791540490Coding
69. (TGG)41215580101558021Coding
70. (TTAA)31215626471562658Non coding
71. (CCA)41215777001577711Coding
72. (ACC)41216154311615442Coding
73. (GGCTG)31516181421618156Coding
74. (GGGT)31216236501623661Coding
75. (GCT)41216267981626809Coding
76. (GCCA)31216285501628561Coding
77. (ACC)41216307601630771Coding
78. (CCTC)31216310961631107Coding
79. (GCG)41216653671665378Coding
80. (TATC)31216782511678262Coding
81. (GGC)41216973341697345Non coding
82. (ACA)41217123301712341Coding
83. (CTG)41217172281717239Coding
84. (GA)61217258771725888Non coding
85. (GATT)31217449541744965Coding
86. (TGC)51517782301778244Non coding
87. (TGG)41217826941782705Coding
88. (GCCAG)31518157771815791Coding
89. (AACT)31218565981856609Coding
90. (GGC)41218823491882360Coding
91. (GCC)41218848581884869Coding
92. (ATGG)31219281561928167Coding
93. (CAGC)31219651411965152Coding
94. (AGCCGG)31819813421981359Coding
95. (ATTA)31219953251995336Non coding
96. (TCT)41220230132023024Coding
97. (TTAT)31220751212075132Non coding
98. (ATTT)41620906232090638Coding
99. (TTGGG)31521460472146061Coding
100. (GTG)41221979962198007Coding
101. (TGG)41222103842210395Coding
102. (GGGC)31222159012215912Coding
103. (GCCG)31222367192236730Coding
104. (ACTT)31222381412238152Coding
105. (TTTA)31222400852240096Coding
106. (CAAG)31222871082287119Non coding
107. (CAGC)31222967432296754Coding
108. (CGC)51523351512335165Coding
109. (CCAA)31223443462344357Coding
110. (CCTA)31223599332359944Coding
111. (GCCG)31223756622375673Coding
112. (TCAG)31223821052382116Non coding
113. (AAAT)31224241082424119Non coding
114. (CTGCT)31524279232427937Coding
115. (CCG)41224554162455427Coding
116. (CAG)41224594012459412Coding
117. (TGGG)41625144672514482Coding
118. (CGC)41225321632532174Coding
119. (CTG)41225353452535356Coding
120. (TCA)41225957622595773Coding
121. (CGGC)31226017622601773Coding
122. (CCG)51526340302634044Coding
123. (ATG)41227587452758756Coding
124. (GGGT)31227660082766019Non coding
125. (TTG)41227915042791515Coding
126. (GACCC)31528881352888149Coding
127. (GCC)41228895612889572Coding
128. (TAAT)31229061892906200Non coding
129. (GCC)41229384782938489Coding
130. (CCA)41230062233006234Coding
131. (GGCT)31230345263034537Non coding
132. (AATA)31230345533034564Non coding
133. (CCGGG)31530642793064293Coding
134. (TGC)41231000513100062Coding
135. (CAA)41231081193108130Coding
136. (CCG)41231134603113471Coding
137. (GGGGT)31531593523159366Coding
138. (TTAA)31231824553182466Non coding
139. (GCG)41231979113197922Coding
140. (GCC)41232264243226435Coding
141. (GGT)41232565933256604Coding
142. (ACTA)31232911423291153Non coding
143. (GAT)41233454573345468Non coding
144. (GTTTG)31533572373357251Coding
145. (CCCG)31233749223374933Coding
146. (ATAG)31234007433400754Non coding
147. (GCC)41234037543403765Coding
148. (GGC)41234210433421054Coding
149. (ACC)41234510013451012Coding
150. (CTGGGT)31834884313488448Coding
151. (CCAA)31235073583507369Coding
152. (ATAA)31235099123509923Coding
153. (AGTC)31235290093529020Coding
154. (GCG)41235292923529303Coding
155. (ATTT)31235348933534904Non coding
156. (TGG)41235627113562722Coding
157. (TGG)41235651433565154Coding
158. (ATG)41235791073579118Coding
159. (TGA)41236306623630673Coding
160. (GGATT)31536903263690340Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.