CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 6312 (NC_019680 3697277 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 160     Density of SSR      : 1SSR/ 23.11 kb   Average length of SSR  : 12.59 bp
Coding      : 132     Non-Coding           : 27   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 78 64 11 4 160
IMPERFECT 0 70 941 747 101 75 1934
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTA)41217661777Non coding
2. (CAG)4121838518396Coding
3. (CTG)5151983919853Coding
4. (GGC)412122626122637Coding
5. (GCC)412137753137764Coding
6. (GCG)412247335247346Coding
7. (GCC)412273300273311Coding
8. (CGG)412285725285736Coding
9. (GAG)412287238287249Coding
10. (GCC)412309431309442Coding
11. (TGA)412367867367878Non coding
12. (GCA)412373059373070Coding
13. (CTG)515387515387529Coding
14. (GGC)412397105397116Coding
15. (GTG)412536238536249Coding
16. (GAC)412538318538329Coding
17. (GCC)515540633540647Coding
18. (GTG)412574968574979Coding
19. (GTG)412665009665020Coding
20. (TGG)412671885671896Coding
21. (CGG)412875877875888Coding
22. (GCC)412915073915084Coding
23. (CTG)412932715932726Coding
24. (GGC)41211166341116645Coding
25. (AAG)41211327731132784Coding
26. (CTT)41211543671154378Coding
27. (CAA)41212263111226322Coding
28. (CAA)41212414561241467Coding
29. (TTG)41212679081267919Non coding
30. (ATT)41213122711312282Coding
31. (AGA)41213367121336723Coding
32. (GCC)41214608001460811Coding
33. (CCG)51514930411493055Coding
34. (AAC)41214997361499747Coding
35. (GGC)41215404791540490Coding
36. (TGG)41215580101558021Coding
37. (CCA)41215777001577711Coding
38. (ACC)41216154311615442Coding
39. (GCT)41216267981626809Coding
40. (ACC)41216307601630771Coding
41. (GCG)41216653671665378Coding
42. (GGC)41216973341697345Non coding
43. (ACA)41217123301712341Coding
44. (CTG)41217172281717239Coding
45. (TGC)51517782301778244Non coding
46. (TGG)41217826941782705Coding
47. (GGC)41218823491882360Coding
48. (GCC)41218848581884869Coding
49. (TCT)41220230132023024Coding
50. (GTG)41221979962198007Coding
51. (TGG)41222103842210395Coding
52. (CGC)51523351512335165Coding
53. (CCG)41224554162455427Coding
54. (CAG)41224594012459412Coding
55. (CGC)41225321632532174Coding
56. (CTG)41225353452535356Coding
57. (TCA)41225957622595773Coding
58. (CCG)51526340302634044Coding
59. (ATG)41227587452758756Coding
60. (TTG)41227915042791515Coding
61. (GCC)41228895612889572Coding
62. (GCC)41229384782938489Coding
63. (CCA)41230062233006234Coding
64. (TGC)41231000513100062Coding
65. (CAA)41231081193108130Coding
66. (CCG)41231134603113471Coding
67. (GCG)41231979113197922Coding
68. (GCC)41232264243226435Coding
69. (GGT)41232565933256604Coding
70. (GAT)41233454573345468Non coding
71. (GCC)41234037543403765Coding
72. (GGC)41234210433421054Coding
73. (ACC)41234510013451012Coding
74. (GCG)41235292923529303Coding
75. (TGG)41235627113562722Coding
76. (TGG)41235651433565154Coding
77. (ATG)41235791073579118Coding
78. (TGA)41236306623630673Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.