CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 6312 (NC_019680 3697277 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 160     Density of SSR      : 1SSR/ 23.11 kb   Average length of SSR  : 12.59 bp
Coding      : 132     Non-Coding           : 27   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 78 64 11 4 160
IMPERFECT 0 70 941 747 101 75 1934
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCTA)312159202159213Non coding
2. (TGGT)312162342162353Coding
3. (TGAT)416211883211898Coding
4. (CCAG)312227056227067Coding
5. (GGTT)312297058297069Non coding
6. (AACC)312349350349361Coding
7. (CGGC)312569167569178Coding
8. (GGGT)416581060581075Coding
9. (ACTG)312639030639041Coding
10. (GGGT)312649018649029Coding
11. (GTGA)312651765651776Non coding
12. (TCCA)312764387764398Coding
13. (ACCC)312772503772514Coding
14. (CCCA)312816965816976Coding
15. (GGTT)312959897959908Coding
16. (GGCT)312968331968342Coding
17. (GCCG)31210159371015948Coding
18. (TTGA)31210712161071227Coding
19. (ATTT)31211014771101488Coding
20. (CCAG)31211938401193851Coding
21. (ATTT)31212870931287104Non coding
22. (TCCG)31212997301299741Non coding
23. (CAAC)31213999401399951Coding
24. (CTGG)31214095131409524Coding
25. (CCAA)31214605111460522Coding
26. (CTGG)31214971521497163Coding
27. (CCCG)31214976081497619Coding
28. (TTAA)31215626471562658Non coding
29. (GGGT)31216236501623661Coding
30. (GCCA)31216285501628561Coding
31. (CCTC)31216310961631107Coding
32. (TATC)31216782511678262Coding
33. (GATT)31217449541744965Coding
34. (AACT)31218565981856609Coding
35. (ATGG)31219281561928167Coding
36. (CAGC)31219651411965152Coding
37. (ATTA)31219953251995336Non coding
38. (TTAT)31220751212075132Non coding
39. (ATTT)41620906232090638Coding
40. (GGGC)31222159012215912Coding
41. (GCCG)31222367192236730Coding
42. (ACTT)31222381412238152Coding
43. (TTTA)31222400852240096Coding
44. (CAAG)31222871082287119Non coding
45. (CAGC)31222967432296754Coding
46. (CCAA)31223443462344357Coding
47. (CCTA)31223599332359944Coding
48. (GCCG)31223756622375673Coding
49. (TCAG)31223821052382116Non coding
50. (AAAT)31224241082424119Non coding
51. (TGGG)41625144672514482Coding
52. (CGGC)31226017622601773Coding
53. (GGGT)31227660082766019Non coding
54. (TAAT)31229061892906200Non coding
55. (GGCT)31230345263034537Non coding
56. (AATA)31230345533034564Non coding
57. (TTAA)31231824553182466Non coding
58. (ACTA)31232911423291153Non coding
59. (CCCG)31233749223374933Coding
60. (ATAG)31234007433400754Non coding
61. (CCAA)31235073583507369Coding
62. (ATAA)31235099123509923Coding
63. (AGTC)31235290093529020Coding
64. (ATTT)31235348933534904Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.