CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 7002 (NC_010475 3008048 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 104     Density of SSR      : 1SSR/ 28.92 kb   Average length of SSR  : 12.52 bp
Coding      : 97     Non-Coding           : 6   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 81 16 0 7 104
IMPERFECT 2 43 802 533 61 68 1509
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTG)41220932104Coding
2. (ACAA)312127476127487Coding
3. (CGC)412133820133831Coding
4. (TAGGCA)318134496134513Coding
5. (GCG)412135524135535Coding
6. (AAGC)312161681161692Non coding
7. (TGG)412178796178807Coding
8. (GGC)412207322207333Coding
9. (GGT)412359473359484Coding
10. (ATG)412367613367624Coding
11. (ACCA)312373768373779Coding
12. (GAA)412379163379174Coding
13. (CGC)412382578382589Coding
14. (GCC)412398972398983Coding
15. (CCA)412399075399086Coding
16. (CAG)412405070405081Coding
17. (AAG)412433973433984Coding
18. (GCC)412462749462760Coding
19. (GGTTCC)318488778488795Coding
20. (GGAC)312510486510497Coding
21. (GTG)412526499526510Coding
22. (CAAC)312551681551692Coding
23. (CAG)412714615714626Coding
24. (CAAT)312722955722966Coding-Non coding
25. (GGC)412727875727886Coding
26. (GATGAC)318784243784260Coding
27. (CCG)412802344802355Coding
28. (CCG)412807451807462Coding
29. (AAT)412816033816044Coding
30. (GCCGTC)318816604816621Coding
31. (ACAG)312821407821418Coding
32. (GGC)412911811911822Coding
33. (CTAT)312981696981707Coding
34. (CGA)412986911986922Coding
35. (CCG)41210598621059873Coding
36. (CAG)41210664501066461Coding
37. (CTT)41210874411087452Coding
38. (CTTA)31211045851104596Coding
39. (CGC)41211328471132858Coding
40. (CAGCAA)31811505191150536Coding
41. (CGC)41211632931163304Coding
42. (AGGGGG)31812658931265910Coding
43. (GAC)41213187931318804Coding
44. (GAA)41213590881359099Coding
45. (ACC)41213811001381111Coding
46. (GTT)41214028741402885Coding
47. (AAC)41214154581415469Coding
48. (GGC)41214529391452950Coding
49. (CTG)51514696161469630Coding
50. (CCG)41214739001473911Coding
51. (TCCT)31215185051518516Coding
52. (GCG)41215412631541274Coding
53. (CCCG)31215465341546545Coding
54. (CTG)41215888481588859Coding
55. (ACA)41215898491589860Coding
56. (GTG)41216410951641106Coding
57. (GGC)41216722361672247Coding
58. (TGG)41216801091680120Coding
59. (CCG)41216885301688541Coding
60. (TGG)51516892151689229Coding
61. (CAG)41217071671707178Coding
62. (GGC)41217114391711450Coding
63. (TGG)41217288271728838Coding
64. (CAA)41217905081790519Coding
65. (GGC)41218176671817678Coding
66. (GTTT)31218248261824837Coding
67. (TGT)41218648691864880Non coding
68. (GCG)41218850431885054Coding
69. (GGC)51518939741893988Coding
70. (GGC)41220308752030886Coding
71. (GTG)41221362952136306Coding
72. (CTGGGG)31822144612214478Coding
73. (CCG)41222294992229510Coding
74. (CGC)41222361942236205Coding
75. (AAC)51522517212251735Coding
76. (TAA)41222631542263165Coding
77. (CGG)41222824392282450Coding
78. (CGC)41223067542306765Coding
79. (GGGA)31223729172372928Coding
80. (TGA)41223819192381930Coding
81. (TGA)41223819462381957Coding
82. (TGG)41223863982386409Coding
83. (CAC)41224014732401484Coding
84. (CTG)41224346502434661Coding
85. (CGG)41224629122462923Coding
86. (TGC)41224954032495414Coding
87. (GCC)41225369062536917Coding
88. (GGT)41225764652576476Coding
89. (CCG)41225813222581333Coding
90. (TGG)41226018372601848Coding
91. (CCA)41226283642628375Coding
92. (GCC)41226301212630132Coding
93. (TAAA)31226937912693802Non coding
94. (GCA)41226972382697249Coding
95. (GGC)41227124622712473Coding
96. (GGTG)31227148292714840Non coding
97. (AATA)31227685422768553Coding
98. (AAC)41228115912811602Coding
99. (GCG)41228461702846181Non coding
100. (CGG)41228920922892103Coding
101. (CCG)41229014062901417Coding
102. (GAT)41229282542928265Coding
103. (TAA)41229737012973712Non coding
104. (CAA)41229999632999974Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.