CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 7002 (NC_010475 3008048 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 104     Density of SSR      : 1SSR/ 28.92 kb   Average length of SSR  : 12.52 bp
Coding      : 97     Non-Coding           : 6   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 81 16 0 7 104
IMPERFECT 2 43 802 533 61 68 1509
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTG)41220932104Coding
2. (CGC)412133820133831Coding
3. (GCG)412135524135535Coding
4. (TGG)412178796178807Coding
5. (GGC)412207322207333Coding
6. (GGT)412359473359484Coding
7. (ATG)412367613367624Coding
8. (GAA)412379163379174Coding
9. (CGC)412382578382589Coding
10. (GCC)412398972398983Coding
11. (CCA)412399075399086Coding
12. (CAG)412405070405081Coding
13. (AAG)412433973433984Coding
14. (GCC)412462749462760Coding
15. (GTG)412526499526510Coding
16. (CAG)412714615714626Coding
17. (GGC)412727875727886Coding
18. (CCG)412802344802355Coding
19. (CCG)412807451807462Coding
20. (AAT)412816033816044Coding
21. (GGC)412911811911822Coding
22. (CGA)412986911986922Coding
23. (CCG)41210598621059873Coding
24. (CAG)41210664501066461Coding
25. (CTT)41210874411087452Coding
26. (CGC)41211328471132858Coding
27. (CGC)41211632931163304Coding
28. (GAC)41213187931318804Coding
29. (GAA)41213590881359099Coding
30. (ACC)41213811001381111Coding
31. (GTT)41214028741402885Coding
32. (AAC)41214154581415469Coding
33. (GGC)41214529391452950Coding
34. (CTG)51514696161469630Coding
35. (CCG)41214739001473911Coding
36. (GCG)41215412631541274Coding
37. (CTG)41215888481588859Coding
38. (ACA)41215898491589860Coding
39. (GTG)41216410951641106Coding
40. (GGC)41216722361672247Coding
41. (TGG)41216801091680120Coding
42. (CCG)41216885301688541Coding
43. (TGG)51516892151689229Coding
44. (CAG)41217071671707178Coding
45. (GGC)41217114391711450Coding
46. (TGG)41217288271728838Coding
47. (CAA)41217905081790519Coding
48. (GGC)41218176671817678Coding
49. (TGT)41218648691864880Non coding
50. (GCG)41218850431885054Coding
51. (GGC)51518939741893988Coding
52. (GGC)41220308752030886Coding
53. (GTG)41221362952136306Coding
54. (CCG)41222294992229510Coding
55. (CGC)41222361942236205Coding
56. (AAC)51522517212251735Coding
57. (TAA)41222631542263165Coding
58. (CGG)41222824392282450Coding
59. (CGC)41223067542306765Coding
60. (TGA)41223819192381930Coding
61. (TGA)41223819462381957Coding
62. (TGG)41223863982386409Coding
63. (CAC)41224014732401484Coding
64. (CTG)41224346502434661Coding
65. (CGG)41224629122462923Coding
66. (TGC)41224954032495414Coding
67. (GCC)41225369062536917Coding
68. (GGT)41225764652576476Coding
69. (CCG)41225813222581333Coding
70. (TGG)41226018372601848Coding
71. (CCA)41226283642628375Coding
72. (GCC)41226301212630132Coding
73. (GCA)41226972382697249Coding
74. (GGC)41227124622712473Coding
75. (AAC)41228115912811602Coding
76. (GCG)41228461702846181Non coding
77. (CGG)41228920922892103Coding
78. (CCG)41229014062901417Coding
79. (GAT)41229282542928265Coding
80. (TAA)41229737012973712Non coding
81. (CAA)41229999632999974Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.