CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Synechococcus sp. PCC 7002 (NC_010475 3008048 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 104     Density of SSR      : 1SSR/ 28.92 kb   Average length of SSR  : 12.52 bp
Coding      : 97     Non-Coding           : 6   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 81 16 0 7 104
IMPERFECT 2 43 802 533 61 68 1509
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACAA)312127476127487Coding
2. (AAGC)312161681161692Non coding
3. (ACCA)312373768373779Coding
4. (GGAC)312510486510497Coding
5. (CAAC)312551681551692Coding
6. (CAAT)312722955722966Coding-Non coding
7. (ACAG)312821407821418Coding
8. (CTAT)312981696981707Coding
9. (CTTA)31211045851104596Coding
10. (TCCT)31215185051518516Coding
11. (CCCG)31215465341546545Coding
12. (GTTT)31218248261824837Coding
13. (GGGA)31223729172372928Coding
14. (TAAA)31226937912693802Non coding
15. (GGTG)31227148292714840Non coding
16. (AATA)31227685422768553Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.