CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 7502 (NC_019702 3510254 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 110     Density of SSR      : 1SSR/ 31.91 kb   Average length of SSR  : 13.01 bp
Coding      : 93     Non-Coding           : 15   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 56 43 2 6 110
IMPERFECT 1 67 880 826 93 61 1928
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCA)4122849728508Coding
2. (CCG)4123869138702Coding
3. (TTTA)3128554285553Coding
4. (CATA)3129603896049Coding
5. (GTT)412107805107816Coding
6. (AACT)312129511129522Coding
7. (TGG)412135688135699Coding
8. (GCC)412137213137224Coding
9. (CAA)412151848151859Coding
10. (ATT)412200105200116Coding
11. (ACC)618251487251504Coding
12. (ACCCTA)318354083354100Coding
13. (GCCA)312426013426024Coding
14. (CCTACA)1272449328449399Coding
15. (TTC)412524143524154Coding
16. (GCT)412528603528614Coding
17. (GGCT)312567660567671Coding
18. (GCT)412648928648939Coding
19. (GGCA)312761146761157Coding
20. (GCA)412818458818469Coding
21. (TAC)412837070837081Coding
22. (CAG)515857819857833Coding
23. (TTGG)312920011920022Coding
24. (GAT)412935621935632Coding
25. (ATCC)312991346991357Coding
26. (TGA)41210726511072662Coding
27. (AGC)41210786801078691Coding
28. (AATT)31210947621094773Non coding
29. (GATA)31210996951099706Coding
30. (TAG)41211069321106943Non coding
31. (TTAA)31211073401107351Non coding
32. (GCC)41211260811126092Coding
33. (GGT)41211575561157567Coding
34. (AAGA)31213957391395750Coding
35. (GAA)41214149551414966Coding
36. (AATT)31214213211421332Non coding
37. (ATTT)31214415031441514Coding
38. (CCA)41214432671443278Coding
39. (TGC)41215090091509020Coding
40. (TGC)61815446221544639Coding
41. (TGC)41215588281558839Coding
42. (CAC)41216301441630155Coding
43. (GCT)41216614621661473Coding
44. (TGG)41216892111689222Coding
45. (AG)61217022381702249Coding
46. (AGGAG)31517753421775356Coding
47. (CAAC)31217823781782389Coding
48. (TCA)41218374681837479Coding
49. (TAGG)31218691041869115Non coding
50. (T)121218910581891069Non coding
51. (GTCA)31219902381990249Coding
52. (GCGA)31221258072125818Coding
53. (AC)61221298002129811Coding
54. (AGTT)31222582452258256Coding-Non coding
55. (TGC)41222621642262175Coding
56. (GATT)31223338612333872Non coding
57. (TGG)41223387612338772Coding
58. (AGCA)31223644842364495Coding
59. (ATGGC)31524010212401035Coding
60. (TGA)41224079962408007Coding
61. (AATA)31224106192410630Coding
62. (GCG)41224494512449462Coding
63. (TATT)31224595982459609Non coding
64. (GGC)41225096962509707Coding
65. (CCAG)31225603642560375Coding
66. (AATT)31225692952569306Coding
67. (TTGC)31225693082569319Coding
68. (TTG)41225727492572760Non coding
69. (TCA)41225778642577875Coding
70. (GCG)41226278822627893Coding
71. (CTG)41226695732669584Coding
72. (ATCA)31226747442674755Non coding
73. (CGC)41226994802699491Coding
74. (TGTA)31227417672741778Non coding
75. (TGC)41227696942769705Coding
76. (CCG)41227848942784905Coding
77. (GCG)41227919082791919Coding
78. (GCT)41228282222828233Coding
79. (CATC)31228392462839257Coding
80. (GAGT)31228581962858207Coding
81. (GAA)41228797342879745Coding
82. (GGT)41229093582909369Coding
83. (GGTT)31229118072911818Non coding
84. (GCA)41229786832978694Coding
85. (CGG)41230041363004147Coding
86. (TAAA)31230289693028980Coding
87. (GATG)31231027083102719Non coding
88. (AGCC)31231207973120808Coding
89. (CTTGGG)31831215723121589Coding
90. (TGC)41231219723121983Coding
91. (CAG)41231236143123625Coding
92. (TTC)41231298813129892Coding
93. (TTGG)31231403143140325Coding
94. (TGTT)31231593703159381Coding
95. (CAG)41232106663210677Coding
96. (CCT)41232225513222562Coding
97. (GCT)41232286113228622Coding
98. (TTTA)31232393663239377Non coding
99. (TATT)31232571693257180Non coding
100. (CCCG)31232595613259572Coding
101. (TCA)41233092383309249Coding
102. (TGAT)31233163143316325Coding
103. (TAA)41233191533319164Coding
104. (CCAAAC)31833261443326161Coding
105. (GGTG)31233724953372506Coding
106. (CCCAAA)31833918373391854Coding
107. (TAAA)31234142463414257Coding-Non coding
108. (ATTGAT)31834796523479669Coding
109. (GTCC)31234830913483102Coding
110. (GAA)41234906713490682Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.