CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 7502 (NC_019702 3510254 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 110     Density of SSR      : 1SSR/ 31.91 kb   Average length of SSR  : 13.01 bp
Coding      : 93     Non-Coding           : 15   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 56 43 2 6 110
IMPERFECT 1 67 880 826 93 61 1928
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCA)4122849728508Coding
2. (CCG)4123869138702Coding
3. (GTT)412107805107816Coding
4. (TGG)412135688135699Coding
5. (GCC)412137213137224Coding
6. (CAA)412151848151859Coding
7. (ATT)412200105200116Coding
8. (ACC)618251487251504Coding
9. (TTC)412524143524154Coding
10. (GCT)412528603528614Coding
11. (GCT)412648928648939Coding
12. (GCA)412818458818469Coding
13. (TAC)412837070837081Coding
14. (CAG)515857819857833Coding
15. (GAT)412935621935632Coding
16. (TGA)41210726511072662Coding
17. (AGC)41210786801078691Coding
18. (TAG)41211069321106943Non coding
19. (GCC)41211260811126092Coding
20. (GGT)41211575561157567Coding
21. (GAA)41214149551414966Coding
22. (CCA)41214432671443278Coding
23. (TGC)41215090091509020Coding
24. (TGC)61815446221544639Coding
25. (TGC)41215588281558839Coding
26. (CAC)41216301441630155Coding
27. (GCT)41216614621661473Coding
28. (TGG)41216892111689222Coding
29. (TCA)41218374681837479Coding
30. (TGC)41222621642262175Coding
31. (TGG)41223387612338772Coding
32. (TGA)41224079962408007Coding
33. (GCG)41224494512449462Coding
34. (GGC)41225096962509707Coding
35. (TTG)41225727492572760Non coding
36. (TCA)41225778642577875Coding
37. (GCG)41226278822627893Coding
38. (CTG)41226695732669584Coding
39. (CGC)41226994802699491Coding
40. (TGC)41227696942769705Coding
41. (CCG)41227848942784905Coding
42. (GCG)41227919082791919Coding
43. (GCT)41228282222828233Coding
44. (GAA)41228797342879745Coding
45. (GGT)41229093582909369Coding
46. (GCA)41229786832978694Coding
47. (CGG)41230041363004147Coding
48. (TGC)41231219723121983Coding
49. (CAG)41231236143123625Coding
50. (TTC)41231298813129892Coding
51. (CAG)41232106663210677Coding
52. (CCT)41232225513222562Coding
53. (GCT)41232286113228622Coding
54. (TCA)41233092383309249Coding
55. (TAA)41233191533319164Coding
56. (GAA)41234906713490682Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.