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Organism:
Synechococcus sp. PCC 7502
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(NC_019702 , 3510254 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
110
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Density of SSR
:
1SSR/
31.91
kb
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Average length of SSR
:
13.01
bp
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Coding
:
93
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Non-Coding
:
15
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Coding and Non-Coding
:
2
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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1
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2
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56
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43
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2
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6
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110
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (TTTA)3 | 12 | 85542 | 85553 | Coding |
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2.
| (CATA)3 | 12 | 96038 | 96049 | Coding |
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3.
| (AACT)3 | 12 | 129511 | 129522 | Coding |
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4.
| (GCCA)3 | 12 | 426013 | 426024 | Coding |
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5.
| (GGCT)3 | 12 | 567660 | 567671 | Coding |
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6.
| (GGCA)3 | 12 | 761146 | 761157 | Coding |
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7.
| (TTGG)3 | 12 | 920011 | 920022 | Coding |
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8.
| (ATCC)3 | 12 | 991346 | 991357 | Coding |
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9.
| (AATT)3 | 12 | 1094762 | 1094773 | Non coding |
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10.
| (GATA)3 | 12 | 1099695 | 1099706 | Coding |
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11.
| (TTAA)3 | 12 | 1107340 | 1107351 | Non coding |
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12.
| (AAGA)3 | 12 | 1395739 | 1395750 | Coding |
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13.
| (AATT)3 | 12 | 1421321 | 1421332 | Non coding |
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14.
| (ATTT)3 | 12 | 1441503 | 1441514 | Coding |
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15.
| (CAAC)3 | 12 | 1782378 | 1782389 | Coding |
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16.
| (TAGG)3 | 12 | 1869104 | 1869115 | Non coding |
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17.
| (GTCA)3 | 12 | 1990238 | 1990249 | Coding |
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18.
| (GCGA)3 | 12 | 2125807 | 2125818 | Coding |
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19.
| (AGTT)3 | 12 | 2258245 | 2258256 | Coding-Non coding |
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20.
| (GATT)3 | 12 | 2333861 | 2333872 | Non coding |
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21.
| (AGCA)3 | 12 | 2364484 | 2364495 | Coding |
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22.
| (AATA)3 | 12 | 2410619 | 2410630 | Coding |
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23.
| (TATT)3 | 12 | 2459598 | 2459609 | Non coding |
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24.
| (CCAG)3 | 12 | 2560364 | 2560375 | Coding |
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25.
| (AATT)3 | 12 | 2569295 | 2569306 | Coding |
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26.
| (TTGC)3 | 12 | 2569308 | 2569319 | Coding |
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27.
| (ATCA)3 | 12 | 2674744 | 2674755 | Non coding |
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28.
| (TGTA)3 | 12 | 2741767 | 2741778 | Non coding |
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29.
| (CATC)3 | 12 | 2839246 | 2839257 | Coding |
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30.
| (GAGT)3 | 12 | 2858196 | 2858207 | Coding |
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31.
| (GGTT)3 | 12 | 2911807 | 2911818 | Non coding |
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32.
| (TAAA)3 | 12 | 3028969 | 3028980 | Coding |
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33.
| (GATG)3 | 12 | 3102708 | 3102719 | Non coding |
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34.
| (AGCC)3 | 12 | 3120797 | 3120808 | Coding |
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35.
| (TTGG)3 | 12 | 3140314 | 3140325 | Coding |
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36.
| (TGTT)3 | 12 | 3159370 | 3159381 | Coding |
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37.
| (TTTA)3 | 12 | 3239366 | 3239377 | Non coding |
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38.
| (TATT)3 | 12 | 3257169 | 3257180 | Non coding |
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39.
| (CCCG)3 | 12 | 3259561 | 3259572 | Coding |
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40.
| (TGAT)3 | 12 | 3316314 | 3316325 | Coding |
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41.
| (GGTG)3 | 12 | 3372495 | 3372506 | Coding |
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42.
| (TAAA)3 | 12 | 3414246 | 3414257 | Coding-Non coding |
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43.
| (GTCC)3 | 12 | 3483091 | 3483102 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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