CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. PCC 7502 (NC_019702 3510254 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 110     Density of SSR      : 1SSR/ 31.91 kb   Average length of SSR  : 13.01 bp
Coding      : 93     Non-Coding           : 15   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 56 43 2 6 110
IMPERFECT 1 67 880 826 93 61 1928
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTA)3128554285553Coding
2. (CATA)3129603896049Coding
3. (AACT)312129511129522Coding
4. (GCCA)312426013426024Coding
5. (GGCT)312567660567671Coding
6. (GGCA)312761146761157Coding
7. (TTGG)312920011920022Coding
8. (ATCC)312991346991357Coding
9. (AATT)31210947621094773Non coding
10. (GATA)31210996951099706Coding
11. (TTAA)31211073401107351Non coding
12. (AAGA)31213957391395750Coding
13. (AATT)31214213211421332Non coding
14. (ATTT)31214415031441514Coding
15. (CAAC)31217823781782389Coding
16. (TAGG)31218691041869115Non coding
17. (GTCA)31219902381990249Coding
18. (GCGA)31221258072125818Coding
19. (AGTT)31222582452258256Coding-Non coding
20. (GATT)31223338612333872Non coding
21. (AGCA)31223644842364495Coding
22. (AATA)31224106192410630Coding
23. (TATT)31224595982459609Non coding
24. (CCAG)31225603642560375Coding
25. (AATT)31225692952569306Coding
26. (TTGC)31225693082569319Coding
27. (ATCA)31226747442674755Non coding
28. (TGTA)31227417672741778Non coding
29. (CATC)31228392462839257Coding
30. (GAGT)31228581962858207Coding
31. (GGTT)31229118072911818Non coding
32. (TAAA)31230289693028980Coding
33. (GATG)31231027083102719Non coding
34. (AGCC)31231207973120808Coding
35. (TTGG)31231403143140325Coding
36. (TGTT)31231593703159381Coding
37. (TTTA)31232393663239377Non coding
38. (TATT)31232571693257180Non coding
39. (CCCG)31232595613259572Coding
40. (TGAT)31233163143316325Coding
41. (GGTG)31233724953372506Coding
42. (TAAA)31234142463414257Coding-Non coding
43. (GTCC)31234830913483102Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.