CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. RCC307 (NC_009482 2224915 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 242     Density of SSR      : 1SSR/ 9.19 kb   Average length of SSR  : 12.74 bp
Coding      : 230     Non-Coding           : 12   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 184 42 5 9 242
IMPERFECT 0 59 1751 598 75 63 2546
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAG)41216051616Coding
2. (GGC)7211706217082Coding
3. (CGG)4121708517096Coding
4. (CAG)5152071220726Coding
5. (CGG)5152386923883Coding
6. (CAG)4122643626447Coding
7. (AGC)4123495334964Coding
8. (CGG)4125850658517Coding
9. (ACC)4127432374334Coding
10. (GCCA)3127713077141Coding
11. (GCCC)3127756977580Coding
12. (TGC)515117592117606Coding
13. (CTG)412136715136726Coding
14. (TGC)412139807139818Coding
15. (CTGG)312143976143987Coding
16. (CAG)412148552148563Coding
17. (GCG)412159471159482Coding
18. (CTT)515202884202898Coding
19. (TCTT)312204960204971Coding
20. (CAT)412205831205842Coding
21. (GTTT)312210465210476Non coding
22. (GCG)515219893219907Coding
23. (GCA)412223464223475Coding
24. (CCA)412244762244773Coding
25. (GCA)412252376252387Coding
26. (GCA)412252509252520Coding
27. (CCA)412261637261648Coding
28. (CCA)412263921263932Coding
29. (CCA)412266592266603Coding
30. (TAC)412266795266806Coding
31. (GCA)412274699274710Coding
32. (GCC)412294631294642Coding
33. (AGC)412326144326155Coding
34. (CAG)515327337327351Coding
35. (CAG)515327424327438Coding
36. (CGA)412333267333278Coding
37. (GCT)412333848333859Coding
38. (GCTG)312340506340517Coding
39. (ACC)412379236379247Coding
40. (TTG)412386210386221Coding
41. (GCTGCG)318410202410219Coding
42. (GCA)412411052411063Coding
43. (GCA)412412665412676Coding
44. (CAG)412420730420741Coding
45. (GTTC)312424429424440Non coding
46. (AGC)412439943439954Coding
47. (TTG)412455333455344Coding
48. (TCAA)312475133475144Non coding
49. (CAG)412506049506060Coding
50. (CAG)412506949506960Coding
51. (CAG)412513019513030Coding
52. (TGG)412526239526250Coding
53. (TGC)412540088540099Coding
54. (CTG)412542449542460Coding
55. (CTG)412548493548504Coding
56. (ACC)412559642559653Coding
57. (CTG)412587277587288Coding
58. (TGG)412589181589192Coding
59. (TGG)412590256590267Coding
60. (GCCCAG)318592435592452Coding
61. (CCA)412596984596995Coding
62. (GCCATG)318607986608003Coding
63. (GGT)412608052608063Coding
64. (GTG)412642663642674Coding
65. (CGG)515654602654616Coding
66. (GCA)515660537660551Coding
67. (TGGCT)315663010663024Coding
68. (CAG)412677374677385Coding
69. (CAG)412677758677769Coding
70. (CAG)515683337683351Coding
71. (CAG)412684744684755Coding
72. (CAC)412701876701887Coding
73. (GCT)412702631702642Coding
74. (CAG)412702767702778Coding
75. (GCA)412713714713725Coding
76. (CCA)515738922738936Coding
77. (CTG)412753601753612Coding
78. (GCT)412758875758886Coding
79. (GCA)412787717787728Coding
80. (GCT)515796331796345Coding
81. (AGC)412796970796981Coding
82. (CAG)412799974799985Coding
83. (CTG)412805437805448Coding
84. (AGGT)312809588809599Coding
85. (TTGCT)315816858816872Coding
86. (GGT)412820860820871Coding
87. (TGG)412837489837500Coding
88. (CTTG)312838814838825Coding
89. (CTG)412869841869852Coding
90. (GCT)412870364870375Coding
91. (GGGGCT)318886097886114Coding
92. (GGA)412886798886809Coding
93. (GCC)412891378891389Coding
94. (TGC)412902887902898Coding
95. (TCGGTG)318923583923600Coding
96. (GGC)412927785927796Coding
97. (GTG)412937480937491Non coding
98. (GAGG)312970341970352Non coding
99. (TGGC)312974626974637Coding
100. (CCA)51510058391005853Coding
101. (TGG)41210131901013201Coding
102. (TGC)41210421721042183Coding
103. (TTGG)31210425111042522Coding
104. (GGTT)31210466121046623Coding
105. (AGC)41210561161056127Coding
106. (GCA)41210562901056301Coding
107. (AGCC)31210565911056602Coding
108. (CCAG)31210756961075707Coding
109. (TCG)41210834471083458Coding
110. (CAG)41210855641085575Coding
111. (GCTG)31210875541087565Coding
112. (GTG)41211004861100497Coding
113. (GTG)41211048071104818Coding
114. (AGC)41211051581105169Coding
115. (CAG)41211330001133011Coding
116. (TGC)41211544001154411Coding
117. (TGG)41211583371158348Coding
118. (TGGC)31211587341158745Coding
119. (CAG)41211998211199832Coding
120. (CGG)72112050291205049Coding
121. (CTTT)31212194711219482Non coding
122. (CGC)41212343501234361Coding
123. (GCT)41212366471236658Coding
124. (GGCT)31212511821251193Coding
125. (GCG)41212522191252230Non coding
126. (AACCC)31512715681271582Coding
127. (CTG)51512846271284641Coding
128. (GGC)51512894971289511Coding
129. (TGAGGC)31812950141295031Coding
130. (CCAAA)31512957201295734Coding
131. (CAC)41212961891296200Coding
132. (TCG)41213014601301471Coding
133. (GCG)51513038001303814Coding
134. (CTG)51513055841305598Coding
135. (ACG)41213155191315530Coding
136. (TGG)41213442481344259Coding
137. (CAGC)31213497241349735Coding
138. (TGG)41213512001351211Coding
139. (CAG)41213753971375408Coding
140. (GGT)41213756901375701Coding
141. (CTGA)31214002001400211Non coding
142. (AAG)41214019621401973Coding
143. (CCA)51514115231411537Coding
144. (CTG)41214126031412614Coding
145. (AAAG)31214172421417253Coding
146. (CTG)41214197681419779Coding
147. (GCCG)31214208871420898Coding
148. (ACG)41214402951440306Coding
149. (CCAG)31214589721458983Coding
150. (GCT)41214736691473680Coding
151. (GCA)41214764921476503Coding
152. (TGC)41214818501481861Coding
153. (GGC)41214908661490877Coding
154. (GCT)82414948261494849Coding
155. (CAAGC)31515067771506791Coding
156. (CCG)41215087891508800Coding
157. (GTG)41215153131515324Coding
158. (CAG)41215169631516974Coding
159. (GCC)41215186351518646Coding
160. (CCA)41215190531519064Coding
161. (GCA)41215492271549238Coding
162. (CAGC)31215526031552614Coding
163. (GCT)41215530191553030Coding
164. (AGC)41215563101556321Coding
165. (CAC)41215664101566421Coding
166. (CAG)41215770551577066Coding
167. (GCG)41215893151589326Coding
168. (CCAG)31215966761596687Coding
169. (CGA)41216219281621939Coding
170. (CGGG)31216314681631479Coding
171. (CTG)41216513231651334Coding
172. (GCCT)31216539761653987Non coding
173. (TGGC)31216708111670822Coding
174. (TGG)41216711951671206Coding
175. (CA)61216872661687277Coding
176. (CCA)41216938341693845Coding
177. (GCA)41217081921708203Coding
178. (GCA)41217227211722732Coding
179. (AATC)31217418791741890Non coding
180. (CT)61217583741758385Coding
181. (TCG)41217628481762859Coding
182. (AGC)41217671481767159Coding
183. (TGC)51517890101789024Coding
184. (CTG)41217958521795863Coding
185. (AGC)41218178011817812Coding
186. (GCG)41218182911818302Coding
187. (GCA)41218188311818842Coding
188. (CAC)41218188921818903Coding
189. (GCCA)31218252201825231Coding
190. (TTGT)31218428811842892Non coding
191. (TGC)41218533441853355Coding
192. (GGC)41218563841856395Coding
193. (CCGGAG)31818641471864164Coding
194. (CGG)41218669511866962Coding
195. (GCG)41218714641871475Coding
196. (CGG)51518851291885143Coding
197. (CGG)41218853931885404Coding
198. (GCG)51518857011885715Coding
199. (CGG)41218880261888037Coding
200. (AAAC)31219006401900651Non coding
201. (TGG)41219019771901988Coding
202. (CAG)41219045781904589Coding
203. (CGAT)31219069471906958Coding
204. (TGG)41219105841910595Coding
205. (GCG)41219219261921937Coding
206. (ACC)41219295351929546Coding
207. (CCTTGG)31819343731934390Coding
208. (GCT)41219441371944148Coding
209. (TGC)41219460511946062Coding
210. (TGG)41219520971952108Coding
211. (CCG)41219542011954212Coding
212. (GCA)41219573141957325Coding
213. (GGCC)31219848391984850Coding
214. (TGC)41219894961989507Coding
215. (CAG)41219969661996977Coding
216. (GCC)41220006202000631Coding
217. (TGG)41220040642004075Coding
218. (AGC)41220061962006207Coding
219. (CCA)41220081712008182Coding
220. (GCCA)31220233382023349Coding
221. (ACC)41220246322024643Coding
222. (CTGG)31220254762025487Coding
223. (GCTG)31220264942026505Coding
224. (GCC)41220288412028852Coding
225. (GCT)41220328142032825Coding
226. (CGG)41220427112042722Coding
227. (GCCG)31220462282046239Coding
228. (CAG)51520601842060198Coding
229. (ACCTCC)42420615702061593Coding
230. (CCG)61820726922072709Coding
231. (GCC)41220857332085744Coding
232. (CAC)41221011712101182Coding
233. (CTG)41221158682115879Coding
234. (GGC)51521171032117117Coding
235. (GCT)41221238902123901Coding
236. (GTG)41221280512128062Coding
237. (CCG)41221328952132906Coding
238. (GCA)41221502212150232Coding
239. (CAG)41221506752150686Coding
240. (CCGG)31221842272184238Coding
241. (GCT)41221866222186633Coding
242. (AATC)31221886982188709Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.