CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. RCC307 (NC_009482 2224915 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 242     Density of SSR      : 1SSR/ 9.19 kb   Average length of SSR  : 12.74 bp
Coding      : 230     Non-Coding           : 12   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 184 42 5 9 242
IMPERFECT 0 59 1751 598 75 63 2546
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAG)41216051616Coding
2. (GGC)7211706217082Coding
3. (CGG)4121708517096Coding
4. (CAG)5152071220726Coding
5. (CGG)5152386923883Coding
6. (CAG)4122643626447Coding
7. (AGC)4123495334964Coding
8. (CGG)4125850658517Coding
9. (ACC)4127432374334Coding
10. (TGC)515117592117606Coding
11. (CTG)412136715136726Coding
12. (TGC)412139807139818Coding
13. (CAG)412148552148563Coding
14. (GCG)412159471159482Coding
15. (CTT)515202884202898Coding
16. (CAT)412205831205842Coding
17. (GCG)515219893219907Coding
18. (GCA)412223464223475Coding
19. (CCA)412244762244773Coding
20. (GCA)412252376252387Coding
21. (GCA)412252509252520Coding
22. (CCA)412261637261648Coding
23. (CCA)412263921263932Coding
24. (CCA)412266592266603Coding
25. (TAC)412266795266806Coding
26. (GCA)412274699274710Coding
27. (GCC)412294631294642Coding
28. (AGC)412326144326155Coding
29. (CAG)515327337327351Coding
30. (CAG)515327424327438Coding
31. (CGA)412333267333278Coding
32. (GCT)412333848333859Coding
33. (ACC)412379236379247Coding
34. (TTG)412386210386221Coding
35. (GCA)412411052411063Coding
36. (GCA)412412665412676Coding
37. (CAG)412420730420741Coding
38. (AGC)412439943439954Coding
39. (TTG)412455333455344Coding
40. (CAG)412506049506060Coding
41. (CAG)412506949506960Coding
42. (CAG)412513019513030Coding
43. (TGG)412526239526250Coding
44. (TGC)412540088540099Coding
45. (CTG)412542449542460Coding
46. (CTG)412548493548504Coding
47. (ACC)412559642559653Coding
48. (CTG)412587277587288Coding
49. (TGG)412589181589192Coding
50. (TGG)412590256590267Coding
51. (CCA)412596984596995Coding
52. (GGT)412608052608063Coding
53. (GTG)412642663642674Coding
54. (CGG)515654602654616Coding
55. (GCA)515660537660551Coding
56. (CAG)412677374677385Coding
57. (CAG)412677758677769Coding
58. (CAG)515683337683351Coding
59. (CAG)412684744684755Coding
60. (CAC)412701876701887Coding
61. (GCT)412702631702642Coding
62. (CAG)412702767702778Coding
63. (GCA)412713714713725Coding
64. (CCA)515738922738936Coding
65. (CTG)412753601753612Coding
66. (GCT)412758875758886Coding
67. (GCA)412787717787728Coding
68. (GCT)515796331796345Coding
69. (AGC)412796970796981Coding
70. (CAG)412799974799985Coding
71. (CTG)412805437805448Coding
72. (GGT)412820860820871Coding
73. (TGG)412837489837500Coding
74. (CTG)412869841869852Coding
75. (GCT)412870364870375Coding
76. (GGA)412886798886809Coding
77. (GCC)412891378891389Coding
78. (TGC)412902887902898Coding
79. (GGC)412927785927796Coding
80. (GTG)412937480937491Non coding
81. (CCA)51510058391005853Coding
82. (TGG)41210131901013201Coding
83. (TGC)41210421721042183Coding
84. (AGC)41210561161056127Coding
85. (GCA)41210562901056301Coding
86. (TCG)41210834471083458Coding
87. (CAG)41210855641085575Coding
88. (GTG)41211004861100497Coding
89. (GTG)41211048071104818Coding
90. (AGC)41211051581105169Coding
91. (CAG)41211330001133011Coding
92. (TGC)41211544001154411Coding
93. (TGG)41211583371158348Coding
94. (CAG)41211998211199832Coding
95. (CGG)72112050291205049Coding
96. (CGC)41212343501234361Coding
97. (GCT)41212366471236658Coding
98. (GCG)41212522191252230Non coding
99. (CTG)51512846271284641Coding
100. (GGC)51512894971289511Coding
101. (CAC)41212961891296200Coding
102. (TCG)41213014601301471Coding
103. (GCG)51513038001303814Coding
104. (CTG)51513055841305598Coding
105. (ACG)41213155191315530Coding
106. (TGG)41213442481344259Coding
107. (TGG)41213512001351211Coding
108. (CAG)41213753971375408Coding
109. (GGT)41213756901375701Coding
110. (AAG)41214019621401973Coding
111. (CCA)51514115231411537Coding
112. (CTG)41214126031412614Coding
113. (CTG)41214197681419779Coding
114. (ACG)41214402951440306Coding
115. (GCT)41214736691473680Coding
116. (GCA)41214764921476503Coding
117. (TGC)41214818501481861Coding
118. (GGC)41214908661490877Coding
119. (GCT)82414948261494849Coding
120. (CCG)41215087891508800Coding
121. (GTG)41215153131515324Coding
122. (CAG)41215169631516974Coding
123. (GCC)41215186351518646Coding
124. (CCA)41215190531519064Coding
125. (GCA)41215492271549238Coding
126. (GCT)41215530191553030Coding
127. (AGC)41215563101556321Coding
128. (CAC)41215664101566421Coding
129. (CAG)41215770551577066Coding
130. (GCG)41215893151589326Coding
131. (CGA)41216219281621939Coding
132. (CTG)41216513231651334Coding
133. (TGG)41216711951671206Coding
134. (CCA)41216938341693845Coding
135. (GCA)41217081921708203Coding
136. (GCA)41217227211722732Coding
137. (TCG)41217628481762859Coding
138. (AGC)41217671481767159Coding
139. (TGC)51517890101789024Coding
140. (CTG)41217958521795863Coding
141. (AGC)41218178011817812Coding
142. (GCG)41218182911818302Coding
143. (GCA)41218188311818842Coding
144. (CAC)41218188921818903Coding
145. (TGC)41218533441853355Coding
146. (GGC)41218563841856395Coding
147. (CGG)41218669511866962Coding
148. (GCG)41218714641871475Coding
149. (CGG)51518851291885143Coding
150. (CGG)41218853931885404Coding
151. (GCG)51518857011885715Coding
152. (CGG)41218880261888037Coding
153. (TGG)41219019771901988Coding
154. (CAG)41219045781904589Coding
155. (TGG)41219105841910595Coding
156. (GCG)41219219261921937Coding
157. (ACC)41219295351929546Coding
158. (GCT)41219441371944148Coding
159. (TGC)41219460511946062Coding
160. (TGG)41219520971952108Coding
161. (CCG)41219542011954212Coding
162. (GCA)41219573141957325Coding
163. (TGC)41219894961989507Coding
164. (CAG)41219969661996977Coding
165. (GCC)41220006202000631Coding
166. (TGG)41220040642004075Coding
167. (AGC)41220061962006207Coding
168. (CCA)41220081712008182Coding
169. (ACC)41220246322024643Coding
170. (GCC)41220288412028852Coding
171. (GCT)41220328142032825Coding
172. (CGG)41220427112042722Coding
173. (CAG)51520601842060198Coding
174. (CCG)61820726922072709Coding
175. (GCC)41220857332085744Coding
176. (CAC)41221011712101182Coding
177. (CTG)41221158682115879Coding
178. (GGC)51521171032117117Coding
179. (GCT)41221238902123901Coding
180. (GTG)41221280512128062Coding
181. (CCG)41221328952132906Coding
182. (GCA)41221502212150232Coding
183. (CAG)41221506752150686Coding
184. (GCT)41221866222186633Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.