CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. RCC307 (NC_009482 2224915 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 242     Density of SSR      : 1SSR/ 9.19 kb   Average length of SSR  : 12.74 bp
Coding      : 230     Non-Coding           : 12   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 184 42 5 9 242
IMPERFECT 0 59 1751 598 75 63 2546
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCCA)3127713077141Coding
2. (GCCC)3127756977580Coding
3. (CTGG)312143976143987Coding
4. (TCTT)312204960204971Coding
5. (GTTT)312210465210476Non coding
6. (GCTG)312340506340517Coding
7. (GTTC)312424429424440Non coding
8. (TCAA)312475133475144Non coding
9. (AGGT)312809588809599Coding
10. (CTTG)312838814838825Coding
11. (GAGG)312970341970352Non coding
12. (TGGC)312974626974637Coding
13. (TTGG)31210425111042522Coding
14. (GGTT)31210466121046623Coding
15. (AGCC)31210565911056602Coding
16. (CCAG)31210756961075707Coding
17. (GCTG)31210875541087565Coding
18. (TGGC)31211587341158745Coding
19. (CTTT)31212194711219482Non coding
20. (GGCT)31212511821251193Coding
21. (CAGC)31213497241349735Coding
22. (CTGA)31214002001400211Non coding
23. (AAAG)31214172421417253Coding
24. (GCCG)31214208871420898Coding
25. (CCAG)31214589721458983Coding
26. (CAGC)31215526031552614Coding
27. (CCAG)31215966761596687Coding
28. (CGGG)31216314681631479Coding
29. (GCCT)31216539761653987Non coding
30. (TGGC)31216708111670822Coding
31. (AATC)31217418791741890Non coding
32. (GCCA)31218252201825231Coding
33. (TTGT)31218428811842892Non coding
34. (AAAC)31219006401900651Non coding
35. (CGAT)31219069471906958Coding
36. (GGCC)31219848391984850Coding
37. (GCCA)31220233382023349Coding
38. (CTGG)31220254762025487Coding
39. (GCTG)31220264942026505Coding
40. (GCCG)31220462282046239Coding
41. (CCGG)31221842272184238Coding
42. (AATC)31221886982188709Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.