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Organism:
Synechococcus sp. RCC307
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(NC_009482 , 2224915 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
242
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Density of SSR
:
1SSR/
9.19
kb
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Average length of SSR
:
12.74
bp
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Coding
:
230
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Non-Coding
:
12
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Coding and Non-Coding
:
0
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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0
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2
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184
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42
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5
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9
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242
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (GCCA)3 | 12 | 77130 | 77141 | Coding |
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2.
| (GCCC)3 | 12 | 77569 | 77580 | Coding |
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3.
| (CTGG)3 | 12 | 143976 | 143987 | Coding |
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4.
| (TCTT)3 | 12 | 204960 | 204971 | Coding |
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5.
| (GTTT)3 | 12 | 210465 | 210476 | Non coding |
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6.
| (GCTG)3 | 12 | 340506 | 340517 | Coding |
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7.
| (GTTC)3 | 12 | 424429 | 424440 | Non coding |
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8.
| (TCAA)3 | 12 | 475133 | 475144 | Non coding |
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9.
| (AGGT)3 | 12 | 809588 | 809599 | Coding |
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10.
| (CTTG)3 | 12 | 838814 | 838825 | Coding |
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11.
| (GAGG)3 | 12 | 970341 | 970352 | Non coding |
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12.
| (TGGC)3 | 12 | 974626 | 974637 | Coding |
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13.
| (TTGG)3 | 12 | 1042511 | 1042522 | Coding |
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14.
| (GGTT)3 | 12 | 1046612 | 1046623 | Coding |
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15.
| (AGCC)3 | 12 | 1056591 | 1056602 | Coding |
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16.
| (CCAG)3 | 12 | 1075696 | 1075707 | Coding |
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17.
| (GCTG)3 | 12 | 1087554 | 1087565 | Coding |
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18.
| (TGGC)3 | 12 | 1158734 | 1158745 | Coding |
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19.
| (CTTT)3 | 12 | 1219471 | 1219482 | Non coding |
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20.
| (GGCT)3 | 12 | 1251182 | 1251193 | Coding |
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21.
| (CAGC)3 | 12 | 1349724 | 1349735 | Coding |
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22.
| (CTGA)3 | 12 | 1400200 | 1400211 | Non coding |
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23.
| (AAAG)3 | 12 | 1417242 | 1417253 | Coding |
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24.
| (GCCG)3 | 12 | 1420887 | 1420898 | Coding |
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25.
| (CCAG)3 | 12 | 1458972 | 1458983 | Coding |
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26.
| (CAGC)3 | 12 | 1552603 | 1552614 | Coding |
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27.
| (CCAG)3 | 12 | 1596676 | 1596687 | Coding |
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28.
| (CGGG)3 | 12 | 1631468 | 1631479 | Coding |
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29.
| (GCCT)3 | 12 | 1653976 | 1653987 | Non coding |
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30.
| (TGGC)3 | 12 | 1670811 | 1670822 | Coding |
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31.
| (AATC)3 | 12 | 1741879 | 1741890 | Non coding |
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32.
| (GCCA)3 | 12 | 1825220 | 1825231 | Coding |
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33.
| (TTGT)3 | 12 | 1842881 | 1842892 | Non coding |
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34.
| (AAAC)3 | 12 | 1900640 | 1900651 | Non coding |
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35.
| (CGAT)3 | 12 | 1906947 | 1906958 | Coding |
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36.
| (GGCC)3 | 12 | 1984839 | 1984850 | Coding |
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37.
| (GCCA)3 | 12 | 2023338 | 2023349 | Coding |
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38.
| (CTGG)3 | 12 | 2025476 | 2025487 | Coding |
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39.
| (GCTG)3 | 12 | 2026494 | 2026505 | Coding |
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40.
| (GCCG)3 | 12 | 2046228 | 2046239 | Coding |
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41.
| (CCGG)3 | 12 | 2184227 | 2184238 | Coding |
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42.
| (AATC)3 | 12 | 2188698 | 2188709 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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