CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. WH 7803 (NC_009481 2366981 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 174     Density of SSR      : 1SSR/ 13.6 kb   Average length of SSR  : 12.72 bp
Coding      : 164     Non-Coding           : 8   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 117 41 3 11 174
IMPERFECT 0 73 1272 605 73 52 2075
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCAGC)31599669980Coding
2. (CCT)4121189611907Coding
3. (CGG)5151735517369Coding
4. (CGG)4121765517666Coding
5. (GGCT)3122049220503Coding
6. (CTGG)3126686866879Coding
7. (GTG)4126742467435Coding
8. (TGG)4127692876939Coding
9. (CTG)4127702077031Coding
10. (CCG)4127712377134Coding
11. (CCA)4128417084181Coding
12. (GCG)412105147105158Coding
13. (TGG)412105575105586Coding
14. (TGG)412151635151646Coding
15. (CCTGCT)318154985155002Coding
16. (TGC)412156582156593Coding
17. (GGTGCA)318191912191929Coding
18. (CGGC)312192526192537Coding
19. (TGC)412199938199949Coding
20. (CGG)412205443205454Coding
21. (GTGC)312215654215665Coding
22. (CGC)412216968216979Coding
23. (CCA)412218284218295Coding
24. (CAG)412252845252856Coding
25. (CCA)412281190281201Coding
26. (CCTG)312314932314943Non coding
27. (TGC)412315231315242Coding
28. (GCT)412315789315800Coding
29. (GCT)412326178326189Coding
30. (CAC)412328263328274Coding
31. (TGG)412348287348298Coding
32. (CTG)412350116350127Coding
33. (CTG)412374067374078Coding
34. (GTG)412409703409714Coding
35. (GCC)412425375425386Coding
36. (CGG)412464099464110Coding
37. (GGA)412468266468277Coding
38. (CTGG)312476639476650Coding
39. (CAG)412479721479732Coding
40. (AGC)412486315486326Coding
41. (GATCA)315489208489222Coding-Non coding
42. (ACTC)312502896502907Coding
43. (GTG)412505806505817Coding
44. (GCT)412507698507709Coding
45. (CTG)412515468515479Coding
46. (TGG)412531446531457Coding
47. (GGGCTT)318545433545450Coding
48. (TGA)412562027562038Coding
49. (TTGA)312563106563117Coding
50. (CAG)412570361570372Coding
51. (CCG)412573994574005Coding
52. (GTG)412574163574174Coding
53. (ACC)412597794597805Coding
54. (GCAG)312619532619543Coding
55. (CCA)412642701642712Coding
56. (CCAG)416652146652161Coding
57. (TTGG)312668397668408Non coding
58. (GGTT)312694337694348Coding
59. (GGCG)312712213712224Coding
60. (GCG)412721737721748Coding
61. (CAG)412742655742666Coding
62. (CAG)412793007793018Coding
63. (GCCA)312797671797682Coding
64. (GGAT)312803442803453Coding
65. (TACCAC)318810550810567Coding
66. (GCT)412841010841021Coding
67. (TCGA)312875468875479Coding
68. (CTG)515905070905084Coding
69. (CTG)412909195909206Coding
70. (CTTC)312910544910555Coding
71. (GCT)412912714912725Non coding
72. (TGAT)312924286924297Coding-Non coding
73. (GGC)412933890933901Coding
74. (CCGA)312935566935577Coding
75. (CGG)412936707936718Coding
76. (CAA)412944040944051Coding
77. (CCA)412950754950765Coding
78. (AGC)412986874986885Coding
79. (AGC)412994886994897Coding
80. (GCTG)31210224871022498Coding
81. (AGC)41210284821028493Coding
82. (GGGA)31210323741032385Coding
83. (CAC)41210363801036391Coding
84. (GGC)41210575311057542Coding
85. (CT)61210941321094143Coding
86. (GGC)41211387921138803Coding
87. (TGGG)31211502871150298Coding
88. (ACC)41211762571176268Coding
89. (CG)71412956951295708Coding
90. (AGC)41212981441298155Coding
91. (TGG)41213046351304646Coding
92. (ACCACG)31813051811305198Coding
93. (GAG)41213191071319118Coding
94. (GCT)41213248141324825Coding
95. (CCAG)31213458741345885Coding
96. (CGC)41213562481356259Coding
97. (CTG)41213763201376331Non coding
98. (CTGG)52013787561378775Coding
99. (CGC)41213853691385380Coding
100. (GGCGGT)31813902361390253Coding
101. (GTG)41213940801394091Coding
102. (CAG)51514237321423746Coding
103. (GCT)41214396081439619Coding
104. (GTG)41214804121480423Coding
105. (GGT)41215124111512422Coding
106. (TGC)41215156091515620Coding
107. (ATGG)31215215531521564Coding
108. (TGC)41215257951525806Coding
109. (CAA)41215316331531644Non coding
110. (GGAC)31215541021554113Coding
111. (CCA)41215691531569164Coding
112. (TGG)41215715451571556Coding
113. (TGCTGG)31815824131582430Coding
114. (GGT)41215943691594380Coding
115. (TGC)41216421751642186Coding
116. (CTG)41216436421643653Coding
117. (CAG)41216439271643938Coding
118. (CGG)41216580151658026Coding
119. (CTG)41216628211662832Coding
120. (TGC)41217102811710292Coding
121. (TGCC)31217200501720061Coding
122. (CAGC)31217314161731427Coding
123. (GCGCG)31517393881739402Coding
124. (GAC)41217462261746237Coding
125. (GGC)41217721851772196Coding
126. (GCC)51517835151783529Coding
127. (GCC)41217836021783613Coding
128. (CGGT)31218077641807775Coding
129. (GCTG)31218257941825805Coding
130. (GGCG)31218327401832751Coding
131. (TGG)41218346101834621Coding
132. (CCGC)31218347001834711Coding
133. (CAC)41218536511853662Non coding
134. (TCGC)31218586921858703Coding
135. (GCA)41218790901879101Coding
136. (CCATGT)42418988931898916Coding
137. (GGC)61819030091903026Coding
138. (CAG)41219482991948310Coding
139. (GGC)41219529311952942Coding
140. (GCCA)31219657301965741Coding
141. (CTG)41219663971966408Coding
142. (TGC)41219675381967549Coding
143. (TCT)41219919011991912Coding
144. (CGA)41220085412008552Coding
145. (AGC)41220094362009447Coding
146. (CATC)31220134152013426Non coding
147. (TGAT)31220304782030489Non coding
148. (GTG)51520487692048783Coding
149. (CTG)41220550162055027Coding
150. (TGG)41220578292057840Coding
151. (GTG)41220597472059758Coding
152. (TGC)41220632252063236Coding
153. (GGCC)31220659202065931Coding
154. (TGG)41220777152077726Coding
155. (ATTG)31220903552090366Coding
156. (GGC)41221488692148880Coding
157. (CCA)41221496342149645Coding
158. (AGC)41221554852155496Coding
159. (GGT)41221594742159485Coding
160. (CGGA)31221598092159820Coding
161. (GCCAAG)31821726652172682Coding
162. (CAG)51521748522174866Coding
163. (CTG)41221868972186908Coding
164. (TGG)41222069512206962Coding
165. (GAAACA)31822160552216072Coding
166. (CCG)51522261662226180Coding
167. (TCG)41222283202228331Coding
168. (TGG)51522378872237901Coding
169. (GGT)41222389272238938Coding
170. (TCCG)31222764722276483Coding
171. (CCA)41222831182283129Coding
172. (GCA)41222927912292802Coding
173. (GCTG)31223336642333675Coding
174. (ATGAAG)31823564602356477Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.