CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus sp. WH 7803 (NC_009481 2366981 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 174     Density of SSR      : 1SSR/ 13.6 kb   Average length of SSR  : 12.72 bp
Coding      : 164     Non-Coding           : 8   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 117 41 3 11 174
IMPERFECT 0 73 1272 605 73 52 2075
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCT)4121189611907Coding
2. (CGG)5151735517369Coding
3. (CGG)4121765517666Coding
4. (GTG)4126742467435Coding
5. (TGG)4127692876939Coding
6. (CTG)4127702077031Coding
7. (CCG)4127712377134Coding
8. (CCA)4128417084181Coding
9. (GCG)412105147105158Coding
10. (TGG)412105575105586Coding
11. (TGG)412151635151646Coding
12. (TGC)412156582156593Coding
13. (TGC)412199938199949Coding
14. (CGG)412205443205454Coding
15. (CGC)412216968216979Coding
16. (CCA)412218284218295Coding
17. (CAG)412252845252856Coding
18. (CCA)412281190281201Coding
19. (TGC)412315231315242Coding
20. (GCT)412315789315800Coding
21. (GCT)412326178326189Coding
22. (CAC)412328263328274Coding
23. (TGG)412348287348298Coding
24. (CTG)412350116350127Coding
25. (CTG)412374067374078Coding
26. (GTG)412409703409714Coding
27. (GCC)412425375425386Coding
28. (CGG)412464099464110Coding
29. (GGA)412468266468277Coding
30. (CAG)412479721479732Coding
31. (AGC)412486315486326Coding
32. (GTG)412505806505817Coding
33. (GCT)412507698507709Coding
34. (CTG)412515468515479Coding
35. (TGG)412531446531457Coding
36. (TGA)412562027562038Coding
37. (CAG)412570361570372Coding
38. (CCG)412573994574005Coding
39. (GTG)412574163574174Coding
40. (ACC)412597794597805Coding
41. (CCA)412642701642712Coding
42. (GCG)412721737721748Coding
43. (CAG)412742655742666Coding
44. (CAG)412793007793018Coding
45. (GCT)412841010841021Coding
46. (CTG)515905070905084Coding
47. (CTG)412909195909206Coding
48. (GCT)412912714912725Non coding
49. (GGC)412933890933901Coding
50. (CGG)412936707936718Coding
51. (CAA)412944040944051Coding
52. (CCA)412950754950765Coding
53. (AGC)412986874986885Coding
54. (AGC)412994886994897Coding
55. (AGC)41210284821028493Coding
56. (CAC)41210363801036391Coding
57. (GGC)41210575311057542Coding
58. (GGC)41211387921138803Coding
59. (ACC)41211762571176268Coding
60. (AGC)41212981441298155Coding
61. (TGG)41213046351304646Coding
62. (GAG)41213191071319118Coding
63. (GCT)41213248141324825Coding
64. (CGC)41213562481356259Coding
65. (CTG)41213763201376331Non coding
66. (CGC)41213853691385380Coding
67. (GTG)41213940801394091Coding
68. (CAG)51514237321423746Coding
69. (GCT)41214396081439619Coding
70. (GTG)41214804121480423Coding
71. (GGT)41215124111512422Coding
72. (TGC)41215156091515620Coding
73. (TGC)41215257951525806Coding
74. (CAA)41215316331531644Non coding
75. (CCA)41215691531569164Coding
76. (TGG)41215715451571556Coding
77. (GGT)41215943691594380Coding
78. (TGC)41216421751642186Coding
79. (CTG)41216436421643653Coding
80. (CAG)41216439271643938Coding
81. (CGG)41216580151658026Coding
82. (CTG)41216628211662832Coding
83. (TGC)41217102811710292Coding
84. (GAC)41217462261746237Coding
85. (GGC)41217721851772196Coding
86. (GCC)51517835151783529Coding
87. (GCC)41217836021783613Coding
88. (TGG)41218346101834621Coding
89. (CAC)41218536511853662Non coding
90. (GCA)41218790901879101Coding
91. (GGC)61819030091903026Coding
92. (CAG)41219482991948310Coding
93. (GGC)41219529311952942Coding
94. (CTG)41219663971966408Coding
95. (TGC)41219675381967549Coding
96. (TCT)41219919011991912Coding
97. (CGA)41220085412008552Coding
98. (AGC)41220094362009447Coding
99. (GTG)51520487692048783Coding
100. (CTG)41220550162055027Coding
101. (TGG)41220578292057840Coding
102. (GTG)41220597472059758Coding
103. (TGC)41220632252063236Coding
104. (TGG)41220777152077726Coding
105. (GGC)41221488692148880Coding
106. (CCA)41221496342149645Coding
107. (AGC)41221554852155496Coding
108. (GGT)41221594742159485Coding
109. (CAG)51521748522174866Coding
110. (CTG)41221868972186908Coding
111. (TGG)41222069512206962Coding
112. (CCG)51522261662226180Coding
113. (TCG)41222283202228331Coding
114. (TGG)51522378872237901Coding
115. (GGT)41222389272238938Coding
116. (CCA)41222831182283129Coding
117. (GCA)41222927912292802Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.