CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Synechococcus sp. WH 7803 (NC_009481 2366981 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 174     Density of SSR      : 1SSR/ 13.6 kb   Average length of SSR  : 12.72 bp
Coding      : 164     Non-Coding           : 8   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 117 41 3 11 174
IMPERFECT 0 73 1272 605 73 52 2075
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGCT)3122049220503Coding
2. (CTGG)3126686866879Coding
3. (CGGC)312192526192537Coding
4. (GTGC)312215654215665Coding
5. (CCTG)312314932314943Non coding
6. (CTGG)312476639476650Coding
7. (ACTC)312502896502907Coding
8. (TTGA)312563106563117Coding
9. (GCAG)312619532619543Coding
10. (CCAG)416652146652161Coding
11. (TTGG)312668397668408Non coding
12. (GGTT)312694337694348Coding
13. (GGCG)312712213712224Coding
14. (GCCA)312797671797682Coding
15. (GGAT)312803442803453Coding
16. (TCGA)312875468875479Coding
17. (CTTC)312910544910555Coding
18. (TGAT)312924286924297Coding-Non coding
19. (CCGA)312935566935577Coding
20. (GCTG)31210224871022498Coding
21. (GGGA)31210323741032385Coding
22. (TGGG)31211502871150298Coding
23. (CCAG)31213458741345885Coding
24. (CTGG)52013787561378775Coding
25. (ATGG)31215215531521564Coding
26. (GGAC)31215541021554113Coding
27. (TGCC)31217200501720061Coding
28. (CAGC)31217314161731427Coding
29. (CGGT)31218077641807775Coding
30. (GCTG)31218257941825805Coding
31. (GGCG)31218327401832751Coding
32. (CCGC)31218347001834711Coding
33. (TCGC)31218586921858703Coding
34. (GCCA)31219657301965741Coding
35. (CATC)31220134152013426Non coding
36. (TGAT)31220304782030489Non coding
37. (GGCC)31220659202065931Coding
38. (ATTG)31220903552090366Coding
39. (CGGA)31221598092159820Coding
40. (TCCG)31222764722276483Coding
41. (GCTG)31223336642333675Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.