CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_000911 3573471 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.98 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 673 91 51 1853
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (ATTT)3126073160742Coding
3. (GCC)4128333083341Coding
4. (CGT)4129455694567Coding
5. (CAT)412106170106181Coding
6. (CGG)412108607108618Coding
7. (CGC)412135855135866Coding
8. (CAA)412140789140800Coding
9. (GCG)412142017142028Coding
10. (CAC)412148850148861Coding
11. (TGG)412169002169013Coding
12. (TGG)412217304217315Coding
13. (GGC)412220957220968Coding
14. (GATT)312250112250123Coding-Non coding
15. (GCAG)312273309273320Coding
16. (GTTG)312288675288686Coding
17. (GGA)412321449321460Non coding
18. (CAC)412345725345736Coding
19. (GAT)412348064348075Non coding
20. (TAC)412351023351034Non coding
21. (CGG)515356381356395Coding
22. (TTTA)312358877358888Coding
23. (CAC)412385601385612Coding
24. (GCC)412394508394519Coding
25. (CGC)412408843408854Coding
26. (GTTA)312450508450519Non coding
27. (TGG)412451473451484Coding
28. (TAA)412464188464199Coding
29. (CCCTC)315470768470782Coding
30. (CGAC)312471166471177Coding
31. (ATC)412481293481304Coding
32. (TAAA)312487053487064Coding
33. (CCAA)312531019531030Coding
34. (GTT)412549960549971Non coding
35. (TTGA)312583054583065Coding
36. (GGT)412604040604051Coding
37. (TCTCC)315609487609501Coding
38. (CCA)412611613611624Coding
39. (CCA)412618014618025Coding
40. (CTTCC)315621860621874Coding
41. (AAT)412661800661811Coding
42. (CAGTC)315698995699009Coding
43. (GTG)515699267699281Coding
44. (AGCC)312735270735281Coding
45. (TCA)412777160777171Coding
46. (GCC)515798215798229Coding
47. (GAC)412811209811220Coding
48. (CCA)412841560841571Coding
49. (CTT)412857563857574Coding
50. (GTT)412865423865434Coding
51. (TGG)412882924882935Coding
52. (CATA)312915050915061Coding
53. (CGG)412937328937339Coding
54. (GGC)412977407977418Coding
55. (CCG)412992705992716Coding
56. (GGC)51510576621057676Coding
57. (GGTT)31210812231081234Coding
58. (GTG)51511781741178188Coding
59. (CGGTGG)31811783461178363Coding
60. (GCG)41212163381216349Coding
61. (ACC)41212319681231979Coding
62. (GGT)41212579011257912Coding
63. (TTATT)31512942431294257Coding
64. (TAAC)31213192781319289Coding
65. (TGCT)31213322331332244Non coding
66. (TGG)41213338521333863Coding
67. (AAG)41213475831347594Coding
68. (CCA)41213516751351686Coding
69. (CAAT)31213770201377031Coding
70. (CAA)41213787761378787Coding
71. (GACG)41614120171412032Coding
72. (GTC)41214249941425005Coding
73. (TGGG)31214440191444030Coding
74. (ACC)41214495571449568Coding
75. (CCA)41215065781506589Coding
76. (GAG)41215242581524269Non coding
77. (TGG)41215782961578307Coding
78. (AGG)41215942371594248Coding
79. (TGGCGG)31816082901608307Coding
80. (TTTA)31216355891635600Coding
81. (TTG)41216385021638513Coding
82. (CGC)41216413871641398Coding
83. (GGC)51516807541680768Coding
84. (ACCA)31217320971732108Coding
85. (TGGG)31217452031745214Coding
86. (GGGA)31217652611765272Coding
87. (CCA)41217703551770366Coding
88. (AAAC)31217765511776562Coding
89. (TGG)41217848101784821Coding
90. (GGAT)31218248161824827Non coding
91. (TCC)41218380361838047Coding
92. (GCC)41218744701874481Coding
93. (TTG)41220469372046948Non coding
94. (ACC)51520657772065791Coding
95. (GGGCA)31520804392080453Non coding
96. (CCGG)31221131272113138Coding
97. (ACCGCC)31821417092141726Coding
98. (TGG)41221531772153188Coding
99. (ACA)41221820242182035Non coding
100. (TTAA)31221904812190492Non coding
101. (ACAA)31222872232287234Non coding
102. (GCG)41223450162345027Coding
103. (CAC)41223741142374125Coding
104. (TTG)41223771392377150Non coding
105. (CCA)41224276972427708Coding
106. (CGG)41224545592454570Coding
107. (TTGG)31224857872485798Coding
108. (GCT)41225035652503576Coding
109. (ACC)41225270292527040Coding
110. (TTGA)31225525492552560Coding
111. (GGC)51525656822565696Coding
112. (TCAA)31225689752568986Coding
113. (TTAT)31225842492584260Coding
114. (GAT)41226105992610610Non coding
115. (TGGC)31226222092622220Coding
116. (CAC)51526417022641716Coding
117. (CCA)51527376412737655Coding
118. (TTCCGC)31828551252855142Coding
119. (TCCT)31228888472888858Coding
120. (CTT)41229292652929276Coding
121. (CCA)41229772712977282Coding
122. (GGT)41230083723008383Coding
123. (GAGC)31230346823034693Coding
124. (TTG)51530495893049603Coding
125. (TAAT)31230603373060348Coding-Non coding
126. (GATT)31230738783073889Coding
127. (AAAT)31231036533103664Non coding
128. (CCAG)31231648413164852Coding
129. (CCA)41231719273171938Coding
130. (CCAA)31232420603242071Coding
131. (GGC)41232879743287985Coding
132. (CAC)51532984003298414Coding
133. (GCC)41233049863304997Coding
134. (ACC)41233137303313741Coding
135. (CCA)41233217033321714Coding
136. (TGG)41233333503333361Coding
137. (TGG)41233451493345160Coding
138. (CCA)41233621363362147Coding
139. (TTGG)31233725593372570Coding
140. (CGG)51533731453373159Coding
141. (GTT)41233800983380109Non coding
142. (CCG)41234154803415491Coding
143. (ATTT)31234254973425508Coding
144. (CGG)41234541813454192Coding
145. (TGG)41234555463455557Coding
146. (CAGG)31234571233457134Non coding
147. (GCC)41234964233496434Coding
148. (CCG)51535553823555396Coding
149. (ATC)41235711933571204Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.