CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_000911 3573471 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.98 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 673 91 51 1853
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (GCC)4128333083341Coding
3. (CGT)4129455694567Coding
4. (CAT)412106170106181Coding
5. (CGG)412108607108618Coding
6. (CGC)412135855135866Coding
7. (CAA)412140789140800Coding
8. (GCG)412142017142028Coding
9. (CAC)412148850148861Coding
10. (TGG)412169002169013Coding
11. (TGG)412217304217315Coding
12. (GGC)412220957220968Coding
13. (GGA)412321449321460Non coding
14. (CAC)412345725345736Coding
15. (GAT)412348064348075Non coding
16. (TAC)412351023351034Non coding
17. (CGG)515356381356395Coding
18. (CAC)412385601385612Coding
19. (GCC)412394508394519Coding
20. (CGC)412408843408854Coding
21. (TGG)412451473451484Coding
22. (TAA)412464188464199Coding
23. (ATC)412481293481304Coding
24. (GTT)412549960549971Non coding
25. (GGT)412604040604051Coding
26. (CCA)412611613611624Coding
27. (CCA)412618014618025Coding
28. (AAT)412661800661811Coding
29. (GTG)515699267699281Coding
30. (TCA)412777160777171Coding
31. (GCC)515798215798229Coding
32. (GAC)412811209811220Coding
33. (CCA)412841560841571Coding
34. (CTT)412857563857574Coding
35. (GTT)412865423865434Coding
36. (TGG)412882924882935Coding
37. (CGG)412937328937339Coding
38. (GGC)412977407977418Coding
39. (CCG)412992705992716Coding
40. (GGC)51510576621057676Coding
41. (GTG)51511781741178188Coding
42. (GCG)41212163381216349Coding
43. (ACC)41212319681231979Coding
44. (GGT)41212579011257912Coding
45. (TGG)41213338521333863Coding
46. (AAG)41213475831347594Coding
47. (CCA)41213516751351686Coding
48. (CAA)41213787761378787Coding
49. (GTC)41214249941425005Coding
50. (ACC)41214495571449568Coding
51. (CCA)41215065781506589Coding
52. (GAG)41215242581524269Non coding
53. (TGG)41215782961578307Coding
54. (AGG)41215942371594248Coding
55. (TTG)41216385021638513Coding
56. (CGC)41216413871641398Coding
57. (GGC)51516807541680768Coding
58. (CCA)41217703551770366Coding
59. (TGG)41217848101784821Coding
60. (TCC)41218380361838047Coding
61. (GCC)41218744701874481Coding
62. (TTG)41220469372046948Non coding
63. (ACC)51520657772065791Coding
64. (TGG)41221531772153188Coding
65. (ACA)41221820242182035Non coding
66. (GCG)41223450162345027Coding
67. (CAC)41223741142374125Coding
68. (TTG)41223771392377150Non coding
69. (CCA)41224276972427708Coding
70. (CGG)41224545592454570Coding
71. (GCT)41225035652503576Coding
72. (ACC)41225270292527040Coding
73. (GGC)51525656822565696Coding
74. (GAT)41226105992610610Non coding
75. (CAC)51526417022641716Coding
76. (CCA)51527376412737655Coding
77. (CTT)41229292652929276Coding
78. (CCA)41229772712977282Coding
79. (GGT)41230083723008383Coding
80. (TTG)51530495893049603Coding
81. (CCA)41231719273171938Coding
82. (GGC)41232879743287985Coding
83. (CAC)51532984003298414Coding
84. (GCC)41233049863304997Coding
85. (ACC)41233137303313741Coding
86. (CCA)41233217033321714Coding
87. (TGG)41233333503333361Coding
88. (TGG)41233451493345160Coding
89. (CCA)41233621363362147Coding
90. (CGG)51533731453373159Coding
91. (GTT)41233800983380109Non coding
92. (CCG)41234154803415491Coding
93. (CGG)41234541813454192Coding
94. (TGG)41234555463455557Coding
95. (GCC)41234964233496434Coding
96. (CCG)51535553823555396Coding
97. (ATC)41235711933571204Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.