CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_000911 3573471 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.98 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 673 91 51 1853
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTT)3126073160742Coding
2. (GATT)312250112250123Coding-Non coding
3. (GCAG)312273309273320Coding
4. (GTTG)312288675288686Coding
5. (TTTA)312358877358888Coding
6. (GTTA)312450508450519Non coding
7. (CGAC)312471166471177Coding
8. (TAAA)312487053487064Coding
9. (CCAA)312531019531030Coding
10. (TTGA)312583054583065Coding
11. (AGCC)312735270735281Coding
12. (CATA)312915050915061Coding
13. (GGTT)31210812231081234Coding
14. (TAAC)31213192781319289Coding
15. (TGCT)31213322331332244Non coding
16. (CAAT)31213770201377031Coding
17. (GACG)41614120171412032Coding
18. (TGGG)31214440191444030Coding
19. (TTTA)31216355891635600Coding
20. (ACCA)31217320971732108Coding
21. (TGGG)31217452031745214Coding
22. (GGGA)31217652611765272Coding
23. (AAAC)31217765511776562Coding
24. (GGAT)31218248161824827Non coding
25. (CCGG)31221131272113138Coding
26. (TTAA)31221904812190492Non coding
27. (ACAA)31222872232287234Non coding
28. (TTGG)31224857872485798Coding
29. (TTGA)31225525492552560Coding
30. (TCAA)31225689752568986Coding
31. (TTAT)31225842492584260Coding
32. (TGGC)31226222092622220Coding
33. (TCCT)31228888472888858Coding
34. (GAGC)31230346823034693Coding
35. (TAAT)31230603373060348Coding-Non coding
36. (GATT)31230738783073889Coding
37. (AAAT)31231036533103664Non coding
38. (CCAG)31231648413164852Coding
39. (CCAA)31232420603242071Coding
40. (TTGG)31233725593372570Coding
41. (ATTT)31234254973425508Coding
42. (CAGG)31234571233457134Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.