CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_017277 3571104 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.97 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 673 91 51 1853
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (ATTT)3126073160742Coding
3. (GCC)4128333083341Coding
4. (CGT)4129455694567Coding
5. (CAT)412106170106181Coding
6. (CGG)412108607108618Coding
7. (CGC)412135855135866Coding
8. (CAA)412140789140800Coding
9. (GCG)412142017142028Coding
10. (CAC)412148850148861Coding
11. (TGG)412169002169013Coding
12. (TGG)412217304217315Coding
13. (GGC)412220957220968Coding
14. (GATT)312250112250123Coding-Non coding
15. (GCAG)312273309273320Coding
16. (GTTG)312288675288686Coding
17. (GGA)412321449321460Non coding
18. (CAC)412345725345736Coding
19. (GAT)412348064348075Non coding
20. (TAC)412351023351034Non coding
21. (CGG)515356381356395Coding
22. (TTTA)312358877358888Coding
23. (CAC)412385601385612Coding
24. (GCC)412394508394519Coding
25. (CGC)412408843408854Coding
26. (GTTA)312450508450519Non coding
27. (TGG)412451473451484Coding
28. (TAA)412464188464199Coding
29. (CCCTC)315470768470782Coding
30. (CGAC)312471166471177Coding
31. (ATC)412481293481304Coding
32. (TAAA)312487053487064Coding
33. (CCAA)312531019531030Coding
34. (GTT)412549960549971Non coding
35. (TTGA)312583054583065Coding
36. (GGT)412604040604051Coding
37. (TCTCC)315609487609501Coding
38. (CCA)412611613611624Coding
39. (CCA)412618014618025Coding
40. (CTTCC)315621860621874Coding
41. (AAT)412661800661811Coding
42. (CAGTC)315698995699009Coding
43. (GTG)515699267699281Coding
44. (AGCC)312735270735281Coding
45. (TCA)412777160777171Coding
46. (GCC)515798215798229Coding
47. (GAC)412811209811220Coding
48. (CCA)412841560841571Coding
49. (CTT)412857563857574Coding
50. (GTT)412865423865434Coding
51. (TGG)412882924882935Coding
52. (CATA)312915050915061Coding
53. (CGG)412937328937339Coding
54. (GGC)412977407977418Coding
55. (CCG)412992705992716Coding
56. (GGC)51510576621057676Coding
57. (GGTT)31210812231081234Coding
58. (GTG)51511781741178188Coding
59. (CGGTGG)31811783461178363Coding
60. (GCG)41212151551215166Coding
61. (ACC)41212307851230796Coding
62. (GGT)41212567181256729Coding
63. (TTATT)31512930601293074Coding
64. (TAAC)31213180951318106Coding
65. (TGCT)31213310501331061Non coding
66. (TGG)41213326691332680Coding
67. (AAG)41213464001346411Coding
68. (CCA)41213504921350503Coding
69. (CAAT)31213758371375848Coding
70. (CAA)41213775931377604Coding
71. (GACG)41614108341410849Coding
72. (GTC)41214238111423822Coding
73. (TGGG)31214428361442847Coding
74. (ACC)41214483741448385Coding
75. (CCA)41215053951505406Coding
76. (GAG)41215230751523086Non coding
77. (TGG)41215771131577124Coding
78. (AGG)41215930541593065Coding
79. (TGGCGG)31816071071607124Coding
80. (TTTA)31216344061634417Coding
81. (TTG)41216373191637330Coding
82. (CGC)41216402041640215Coding
83. (GGC)51516795711679585Coding
84. (ACCA)31217309141730925Coding
85. (TGGG)31217440201744031Coding
86. (GGGA)31217640781764089Coding
87. (CCA)41217691721769183Coding
88. (AAAC)31217753681775379Coding
89. (TGG)41217836271783638Coding
90. (GGAT)31218236331823644Non coding
91. (TCC)41218368531836864Coding
92. (GCC)41218732871873298Coding
93. (TTG)41220457542045765Non coding
94. (ACC)51520645942064608Coding
95. (GGGCA)31520792562079270Non coding
96. (CCGG)31221119442111955Coding
97. (ACCGCC)31821405262140543Coding
98. (TGG)41221519942152005Coding
99. (ACA)41221808412180852Non coding
100. (TTAA)31221892982189309Non coding
101. (ACAA)31222860392286050Non coding
102. (GCG)41223438322343843Coding
103. (CAC)41223729322372943Coding
104. (TTG)41223759572375968Non coding
105. (CCA)41224265132426524Coding
106. (CGG)41224533752453386Coding
107. (TTGG)31224846032484614Coding
108. (GCT)41225023812502392Coding
109. (ACC)41225258452525856Coding
110. (TTGA)31225513662551377Coding
111. (GGC)51525644992564513Coding
112. (TCAA)31225677922567803Coding
113. (TTAT)31225830662583077Coding
114. (GAT)41226094162609427Non coding
115. (TGGC)31226210262621037Coding
116. (CAC)51526405192640533Coding
117. (CCA)51527364582736472Coding
118. (TTCCGC)31828539422853959Coding
119. (TCCT)31228876642887675Coding
120. (CTT)41229280822928093Coding
121. (CCA)41229760882976099Coding
122. (GGT)41230071893007200Coding
123. (GAGC)31230334993033510Coding
124. (TTG)51530484063048420Coding
125. (TAAT)31230591543059165Coding-Non coding
126. (GATT)31230726953072706Coding
127. (AAAT)31231024703102481Non coding
128. (CCAG)31231636583163669Coding
129. (CCA)41231707443170755Coding
130. (CCAA)31232408773240888Coding
131. (GGC)41232867903286801Coding
132. (CAC)51532972163297230Coding
133. (GCC)41233038023303813Coding
134. (ACC)41233125463312557Coding
135. (CCA)41233205193320530Coding
136. (TGG)41233321663332177Coding
137. (TGG)41233439653343976Coding
138. (CCA)41233609523360963Coding
139. (TTGG)31233713753371386Coding
140. (CGG)51533719613371975Coding
141. (GTT)41233789143378925Non coding
142. (CCG)41234131133413124Coding
143. (ATTT)31234231303423141Coding
144. (CGG)41234518143451825Coding
145. (TGG)41234531793453190Coding
146. (CAGG)31234547563454767Non coding
147. (GCC)41234940563494067Coding
148. (CCG)51535530153553029Coding
149. (ATC)41235688263568837Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.