CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_017277 3571104 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.97 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 673 91 51 1853
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (GCC)4128333083341Coding
3. (CGT)4129455694567Coding
4. (CAT)412106170106181Coding
5. (CGG)412108607108618Coding
6. (CGC)412135855135866Coding
7. (CAA)412140789140800Coding
8. (GCG)412142017142028Coding
9. (CAC)412148850148861Coding
10. (TGG)412169002169013Coding
11. (TGG)412217304217315Coding
12. (GGC)412220957220968Coding
13. (GGA)412321449321460Non coding
14. (CAC)412345725345736Coding
15. (GAT)412348064348075Non coding
16. (TAC)412351023351034Non coding
17. (CGG)515356381356395Coding
18. (CAC)412385601385612Coding
19. (GCC)412394508394519Coding
20. (CGC)412408843408854Coding
21. (TGG)412451473451484Coding
22. (TAA)412464188464199Coding
23. (ATC)412481293481304Coding
24. (GTT)412549960549971Non coding
25. (GGT)412604040604051Coding
26. (CCA)412611613611624Coding
27. (CCA)412618014618025Coding
28. (AAT)412661800661811Coding
29. (GTG)515699267699281Coding
30. (TCA)412777160777171Coding
31. (GCC)515798215798229Coding
32. (GAC)412811209811220Coding
33. (CCA)412841560841571Coding
34. (CTT)412857563857574Coding
35. (GTT)412865423865434Coding
36. (TGG)412882924882935Coding
37. (CGG)412937328937339Coding
38. (GGC)412977407977418Coding
39. (CCG)412992705992716Coding
40. (GGC)51510576621057676Coding
41. (GTG)51511781741178188Coding
42. (GCG)41212151551215166Coding
43. (ACC)41212307851230796Coding
44. (GGT)41212567181256729Coding
45. (TGG)41213326691332680Coding
46. (AAG)41213464001346411Coding
47. (CCA)41213504921350503Coding
48. (CAA)41213775931377604Coding
49. (GTC)41214238111423822Coding
50. (ACC)41214483741448385Coding
51. (CCA)41215053951505406Coding
52. (GAG)41215230751523086Non coding
53. (TGG)41215771131577124Coding
54. (AGG)41215930541593065Coding
55. (TTG)41216373191637330Coding
56. (CGC)41216402041640215Coding
57. (GGC)51516795711679585Coding
58. (CCA)41217691721769183Coding
59. (TGG)41217836271783638Coding
60. (TCC)41218368531836864Coding
61. (GCC)41218732871873298Coding
62. (TTG)41220457542045765Non coding
63. (ACC)51520645942064608Coding
64. (TGG)41221519942152005Coding
65. (ACA)41221808412180852Non coding
66. (GCG)41223438322343843Coding
67. (CAC)41223729322372943Coding
68. (TTG)41223759572375968Non coding
69. (CCA)41224265132426524Coding
70. (CGG)41224533752453386Coding
71. (GCT)41225023812502392Coding
72. (ACC)41225258452525856Coding
73. (GGC)51525644992564513Coding
74. (GAT)41226094162609427Non coding
75. (CAC)51526405192640533Coding
76. (CCA)51527364582736472Coding
77. (CTT)41229280822928093Coding
78. (CCA)41229760882976099Coding
79. (GGT)41230071893007200Coding
80. (TTG)51530484063048420Coding
81. (CCA)41231707443170755Coding
82. (GGC)41232867903286801Coding
83. (CAC)51532972163297230Coding
84. (GCC)41233038023303813Coding
85. (ACC)41233125463312557Coding
86. (CCA)41233205193320530Coding
87. (TGG)41233321663332177Coding
88. (TGG)41233439653343976Coding
89. (CCA)41233609523360963Coding
90. (CGG)51533719613371975Coding
91. (GTT)41233789143378925Non coding
92. (CCG)41234131133413124Coding
93. (CGG)41234518143451825Coding
94. (TGG)41234531793453190Coding
95. (GCC)41234940563494067Coding
96. (CCG)51535530153553029Coding
97. (ATC)41235688263568837Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.