CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_017277 3571104 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.97 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 673 91 51 1853
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTT)3126073160742Coding
2. (GATT)312250112250123Coding-Non coding
3. (GCAG)312273309273320Coding
4. (GTTG)312288675288686Coding
5. (TTTA)312358877358888Coding
6. (GTTA)312450508450519Non coding
7. (CGAC)312471166471177Coding
8. (TAAA)312487053487064Coding
9. (CCAA)312531019531030Coding
10. (TTGA)312583054583065Coding
11. (AGCC)312735270735281Coding
12. (CATA)312915050915061Coding
13. (GGTT)31210812231081234Coding
14. (TAAC)31213180951318106Coding
15. (TGCT)31213310501331061Non coding
16. (CAAT)31213758371375848Coding
17. (GACG)41614108341410849Coding
18. (TGGG)31214428361442847Coding
19. (TTTA)31216344061634417Coding
20. (ACCA)31217309141730925Coding
21. (TGGG)31217440201744031Coding
22. (GGGA)31217640781764089Coding
23. (AAAC)31217753681775379Coding
24. (GGAT)31218236331823644Non coding
25. (CCGG)31221119442111955Coding
26. (TTAA)31221892982189309Non coding
27. (ACAA)31222860392286050Non coding
28. (TTGG)31224846032484614Coding
29. (TTGA)31225513662551377Coding
30. (TCAA)31225677922567803Coding
31. (TTAT)31225830662583077Coding
32. (TGGC)31226210262621037Coding
33. (TCCT)31228876642887675Coding
34. (GAGC)31230334993033510Coding
35. (TAAT)31230591543059165Coding-Non coding
36. (GATT)31230726953072706Coding
37. (AAAT)31231024703102481Non coding
38. (CCAG)31231636583163669Coding
39. (CCAA)31232408773240888Coding
40. (TTGG)31233713753371386Coding
41. (ATTT)31234231303423141Coding
42. (CAGG)31234547563454767Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.