CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_020286 3569562 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 127     Non-Coding           : 20   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 50 1851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (ATTT)3126073160742Coding
3. (GCC)4128333083341Coding
4. (CGT)4129455694567Coding
5. (CAT)412106170106181Coding
6. (CGG)412108607108618Coding
7. (CGC)412135855135866Coding
8. (CAA)412140789140800Coding
9. (GCG)412142017142028Coding
10. (CAC)412148850148861Coding
11. (TGG)412169002169013Coding
12. (TGG)412217304217315Coding
13. (GGC)412220957220968Coding
14. (GATT)312250112250123Coding-Non coding
15. (GCAG)312273309273320Coding
16. (GTTG)312288675288686Coding
17. (GGA)412321449321460Non coding
18. (CAC)412345725345736Coding
19. (GAT)412348064348075Non coding
20. (TAC)412351023351034Non coding
21. (CGG)515356381356395Coding
22. (TTTA)312358877358888Coding
23. (CAC)412385601385612Coding
24. (GCC)412394610394621Coding
25. (CGC)412408945408956Coding
26. (GTTA)312450610450621Non coding
27. (TGG)412451575451586Coding
28. (TAA)412464290464301Coding
29. (CCCTC)315470870470884Coding
30. (CGAC)312471268471279Coding
31. (ATC)412481395481406Coding
32. (TAAA)312487155487166Coding
33. (CCAA)312530521530532Coding
34. (GTT)412549462549473Non coding
35. (TTGA)312582556582567Coding
36. (GGT)412603542603553Coding
37. (TCTCC)315608989609003Coding
38. (CCA)412611115611126Coding
39. (CCA)412617516617527Coding
40. (CTTCC)315621362621376Coding
41. (AAT)412661302661313Coding
42. (CAGTC)315698497698511Coding
43. (GTG)515698769698783Coding
44. (AGCC)312734771734782Coding
45. (TCA)412776661776672Coding
46. (GCC)515797870797884Coding
47. (GAC)412810864810875Non coding
48. (CCA)412841215841226Coding
49. (CTT)412857218857229Coding
50. (GTT)412865078865089Coding
51. (TGG)412882579882590Coding
52. (CATA)312914705914716Coding
53. (CGG)412936983936994Coding
54. (GGC)412977062977073Coding
55. (CCG)412992360992371Coding
56. (GGC)51510573171057331Coding
57. (GGTT)31210808781080889Coding
58. (GTG)51511778291177843Coding
59. (CGGTGG)31811780011178018Coding
60. (GCG)41212148081214819Coding
61. (ACC)41212304381230449Coding
62. (GGT)41212563711256382Coding
63. (TTATT)31512927131292727Coding
64. (TAAC)31213177481317759Coding
65. (TGCT)31213307031330714Non coding
66. (TGG)41213323221332333Coding
67. (AAG)41213460531346064Coding
68. (CCA)41213501451350156Coding
69. (CAAT)31213754901375501Coding
70. (CAA)41213772461377257Coding
71. (GACG)41614104871410502Coding
72. (GTC)41214234641423475Non coding
73. (TGGG)31214424881442499Coding
74. (ACC)41214480261448037Coding
75. (CCA)41215050471505058Coding
76. (GAG)41215227271522738Non coding
77. (TGG)41215767651576776Coding
78. (AGG)41215927061592717Coding
79. (TGGCGG)31816067591606776Coding
80. (TTTA)31216340581634069Coding
81. (TTG)41216369711636982Coding
82. (CGC)41216398561639867Coding
83. (GGC)51516792231679237Coding
84. (ACCA)31217305661730577Coding
85. (TGGG)31217436721743683Coding
86. (GGGA)31217637301763741Coding
87. (CCA)41217688241768835Coding
88. (AAAC)31217750201775031Coding
89. (TGG)41217832791783290Coding
90. (GGAT)31218232851823296Non coding
91. (TCC)41218365051836516Coding
92. (GCC)41218729391872950Coding
93. (TTG)41220454062045417Non coding
94. (ACC)51520630452063059Coding
95. (GGGCA)31520777072077721Non coding
96. (CCGG)31221103952110406Coding
97. (ACCGCC)31821389772138994Coding
98. (TGG)41221504452150456Coding
99. (ACA)41221792922179303Non coding
100. (TTAA)31221877492187760Non coding
101. (ACAA)31222844902284501Non coding
102. (GCG)41223422832342294Coding
103. (CAC)41223713832371394Coding
104. (TTG)41223744082374419Non coding
105. (CCA)41224249642424975Coding
106. (CGG)41224518262451837Coding
107. (TTGG)31224830542483065Coding
108. (GCT)41225008322500843Coding
109. (ACC)41225242962524307Coding
110. (TTGA)31225498172549828Coding
111. (GGC)51525629502562964Coding
112. (TCAA)31225662432566254Coding
113. (TTAT)31225815172581528Coding
114. (GAT)41226078672607878Non coding
115. (TGGC)31226194772619488Coding
116. (CAC)51526389702638984Coding
117. (CCA)51527349092734923Coding
118. (TTCCGC)31828523932852410Coding
119. (TCCT)31228861152886126Coding
120. (CTT)41229265332926544Coding
121. (CCA)41229745392974550Coding
122. (GGT)41230056403005651Coding
123. (GAGC)31230319503031961Coding
124. (TTG)51530468573046871Coding
125. (TAAT)31230576053057616Coding-Non coding
126. (GATT)31230711463071157Coding
127. (AAAT)31231009213100932Non coding
128. (CCAG)31231621093162120Coding
129. (CCA)41231691953169206Coding
130. (CCAA)31232393293239340Coding
131. (GGC)41232852423285253Coding
132. (CAC)51532956683295682Coding
133. (GCC)41233022543302265Coding
134. (ACC)41233109983311009Coding
135. (CCA)41233189713318982Coding
136. (TGG)41233306183330629Coding
137. (TGG)41233424173342428Coding
138. (CCA)41233594043359415Coding
139. (TTGG)31233698263369837Coding
140. (CGG)51533704123370426Coding
141. (GTT)41233773653377376Non coding
142. (CCG)41234115713411582Coding
143. (ATTT)31234215883421599Coding
144. (CGG)41234502723450283Coding
145. (TGG)41234516373451648Coding
146. (CAGG)31234532143453225Non coding
147. (GCC)41234925143492525Coding
148. (CCG)51535514733551487Coding
149. (ATC)41235672843567295Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.