CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_020286 3569562 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 127     Non-Coding           : 20   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 50 1851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (GCC)4128333083341Coding
3. (CGT)4129455694567Coding
4. (CAT)412106170106181Coding
5. (CGG)412108607108618Coding
6. (CGC)412135855135866Coding
7. (CAA)412140789140800Coding
8. (GCG)412142017142028Coding
9. (CAC)412148850148861Coding
10. (TGG)412169002169013Coding
11. (TGG)412217304217315Coding
12. (GGC)412220957220968Coding
13. (GGA)412321449321460Non coding
14. (CAC)412345725345736Coding
15. (GAT)412348064348075Non coding
16. (TAC)412351023351034Non coding
17. (CGG)515356381356395Coding
18. (CAC)412385601385612Coding
19. (GCC)412394610394621Coding
20. (CGC)412408945408956Coding
21. (TGG)412451575451586Coding
22. (TAA)412464290464301Coding
23. (ATC)412481395481406Coding
24. (GTT)412549462549473Non coding
25. (GGT)412603542603553Coding
26. (CCA)412611115611126Coding
27. (CCA)412617516617527Coding
28. (AAT)412661302661313Coding
29. (GTG)515698769698783Coding
30. (TCA)412776661776672Coding
31. (GCC)515797870797884Coding
32. (GAC)412810864810875Non coding
33. (CCA)412841215841226Coding
34. (CTT)412857218857229Coding
35. (GTT)412865078865089Coding
36. (TGG)412882579882590Coding
37. (CGG)412936983936994Coding
38. (GGC)412977062977073Coding
39. (CCG)412992360992371Coding
40. (GGC)51510573171057331Coding
41. (GTG)51511778291177843Coding
42. (GCG)41212148081214819Coding
43. (ACC)41212304381230449Coding
44. (GGT)41212563711256382Coding
45. (TGG)41213323221332333Coding
46. (AAG)41213460531346064Coding
47. (CCA)41213501451350156Coding
48. (CAA)41213772461377257Coding
49. (GTC)41214234641423475Non coding
50. (ACC)41214480261448037Coding
51. (CCA)41215050471505058Coding
52. (GAG)41215227271522738Non coding
53. (TGG)41215767651576776Coding
54. (AGG)41215927061592717Coding
55. (TTG)41216369711636982Coding
56. (CGC)41216398561639867Coding
57. (GGC)51516792231679237Coding
58. (CCA)41217688241768835Coding
59. (TGG)41217832791783290Coding
60. (TCC)41218365051836516Coding
61. (GCC)41218729391872950Coding
62. (TTG)41220454062045417Non coding
63. (ACC)51520630452063059Coding
64. (TGG)41221504452150456Coding
65. (ACA)41221792922179303Non coding
66. (GCG)41223422832342294Coding
67. (CAC)41223713832371394Coding
68. (TTG)41223744082374419Non coding
69. (CCA)41224249642424975Coding
70. (CGG)41224518262451837Coding
71. (GCT)41225008322500843Coding
72. (ACC)41225242962524307Coding
73. (GGC)51525629502562964Coding
74. (GAT)41226078672607878Non coding
75. (CAC)51526389702638984Coding
76. (CCA)51527349092734923Coding
77. (CTT)41229265332926544Coding
78. (CCA)41229745392974550Coding
79. (GGT)41230056403005651Coding
80. (TTG)51530468573046871Coding
81. (CCA)41231691953169206Coding
82. (GGC)41232852423285253Coding
83. (CAC)51532956683295682Coding
84. (GCC)41233022543302265Coding
85. (ACC)41233109983311009Coding
86. (CCA)41233189713318982Coding
87. (TGG)41233306183330629Coding
88. (TGG)41233424173342428Coding
89. (CCA)41233594043359415Coding
90. (CGG)51533704123370426Coding
91. (GTT)41233773653377376Non coding
92. (CCG)41234115713411582Coding
93. (CGG)41234502723450283Coding
94. (TGG)41234516373451648Coding
95. (GCC)41234925143492525Coding
96. (CCG)51535514733551487Coding
97. (ATC)41235672843567295Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.