CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 (NC_020286 3569562 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 127     Non-Coding           : 20   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 50 1851
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTT)3126073160742Coding
2. (GATT)312250112250123Coding-Non coding
3. (GCAG)312273309273320Coding
4. (GTTG)312288675288686Coding
5. (TTTA)312358877358888Coding
6. (GTTA)312450610450621Non coding
7. (CGAC)312471268471279Coding
8. (TAAA)312487155487166Coding
9. (CCAA)312530521530532Coding
10. (TTGA)312582556582567Coding
11. (AGCC)312734771734782Coding
12. (CATA)312914705914716Coding
13. (GGTT)31210808781080889Coding
14. (TAAC)31213177481317759Coding
15. (TGCT)31213307031330714Non coding
16. (CAAT)31213754901375501Coding
17. (GACG)41614104871410502Coding
18. (TGGG)31214424881442499Coding
19. (TTTA)31216340581634069Coding
20. (ACCA)31217305661730577Coding
21. (TGGG)31217436721743683Coding
22. (GGGA)31217637301763741Coding
23. (AAAC)31217750201775031Coding
24. (GGAT)31218232851823296Non coding
25. (CCGG)31221103952110406Coding
26. (TTAA)31221877492187760Non coding
27. (ACAA)31222844902284501Non coding
28. (TTGG)31224830542483065Coding
29. (TTGA)31225498172549828Coding
30. (TCAA)31225662432566254Coding
31. (TTAT)31225815172581528Coding
32. (TGGC)31226194772619488Coding
33. (TCCT)31228861152886126Coding
34. (GAGC)31230319503031961Coding
35. (TAAT)31230576053057616Coding-Non coding
36. (GATT)31230711463071157Coding
37. (AAAT)31231009213100932Non coding
38. (CCAG)31231621093162120Coding
39. (CCAA)31232393293239340Coding
40. (TTGG)31233698263369837Coding
41. (ATTT)31234215883421599Coding
42. (CAGG)31234532143453225Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.