CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. GT-I (NC_017038 3570005 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (ATTT)3126073160742Coding
3. (GCC)4128333083341Coding
4. (CGT)4129455694567Coding
5. (CAT)412106170106181Coding
6. (CGG)412108607108618Coding
7. (CGC)412135855135866Coding
8. (CAA)412140789140800Coding
9. (GCG)412142017142028Coding
10. (CAC)412148850148861Coding
11. (TGG)412169002169013Coding
12. (TGG)412217304217315Coding
13. (GGC)412220957220968Coding
14. (GATT)312250112250123Coding-Non coding
15. (GCAG)312273309273320Coding
16. (GTTG)312288675288686Coding
17. (GGA)412321449321460Non coding
18. (CAC)412345725345736Coding
19. (GAT)412348064348075Non coding
20. (TAC)412351023351034Non coding
21. (CGG)515356381356395Coding
22. (TTTA)312358877358888Coding
23. (CAC)412385601385612Coding
24. (GCC)412394610394621Coding
25. (CGC)412408945408956Coding
26. (GTTA)312450610450621Non coding
27. (TGG)412451575451586Coding
28. (TAA)412464290464301Coding
29. (CCCTC)315470870470884Coding
30. (CGAC)312471268471279Coding
31. (ATC)412481395481406Coding
32. (TAAA)312487155487166Coding
33. (CCAA)312531121531132Coding
34. (GTT)412550062550073Non coding
35. (TTGA)312583156583167Coding
36. (GGT)412604142604153Coding
37. (TCTCC)315609589609603Coding
38. (CCA)412611715611726Coding
39. (CCA)412618116618127Coding
40. (CTTCC)315621962621976Coding
41. (AAT)412661902661913Coding
42. (CAGTC)315699097699111Coding
43. (GTG)515699369699383Coding
44. (AGCC)312735372735383Coding
45. (TCA)412777262777273Coding
46. (GCC)515798317798331Coding
47. (GAC)412811311811322Coding
48. (CCA)412841662841673Coding
49. (CTT)412857665857676Coding
50. (GTT)412865525865536Coding
51. (TGG)412883026883037Coding
52. (CATA)312915152915163Coding
53. (CGG)412937430937441Coding
54. (GGC)412977509977520Coding
55. (CCG)412992807992818Coding
56. (GGC)51510577641057778Coding
57. (GGTT)31210813251081336Coding
58. (GTG)51511782761178290Coding
59. (CGGTGG)31811784481178465Coding
60. (GCG)41212152571215268Coding
61. (ACC)41212308871230898Coding
62. (GGT)41212568201256831Coding
63. (TTATT)31512931621293176Coding
64. (TAAC)31213181971318208Coding
65. (TGCT)31213311521331163Non coding
66. (TGG)41213327711332782Coding
67. (AAG)41213465021346513Coding
68. (CCA)41213505941350605Coding
69. (CAAT)31213759391375950Coding
70. (CAA)41213776951377706Coding
71. (GACG)41614109361410951Coding
72. (GTC)41214239131423924Coding
73. (TGGG)31214429381442949Coding
74. (ACC)41214484761448487Coding
75. (CCA)41215054971505508Coding
76. (GAG)41215231771523188Non coding
77. (TGG)41215772151577226Coding
78. (AGG)41215931561593167Coding
79. (TGGCGG)31816072091607226Coding
80. (TTTA)31216345081634519Coding
81. (TTG)41216374211637432Coding
82. (CGC)41216403061640317Coding
83. (GGC)51516796731679687Coding
84. (ACCA)31217310161731027Coding
85. (TGGG)31217441221744133Coding
86. (GGGA)31217641801764191Coding
87. (CCA)41217692741769285Coding
88. (AAAC)31217754701775481Coding
89. (TGG)41217837291783740Coding
90. (GGAT)31218237351823746Non coding
91. (TCC)41218369551836966Coding
92. (GCC)41218733891873400Coding
93. (TTG)41220458562045867Non coding
94. (ACC)51520634952063509Coding
95. (GGGCA)31520781572078171Non coding
96. (CCGG)31221108452110856Coding
97. (ACCGCC)31821394272139444Coding
98. (TGG)41221508952150906Coding
99. (ACA)41221797422179753Non coding
100. (TTAA)31221881992188210Non coding
101. (ACAA)31222849402284951Non coding
102. (GCG)41223427332342744Coding
103. (CAC)41223718332371844Coding
104. (TTG)41223748582374869Non coding
105. (CCA)41224254142425425Coding
106. (CGG)41224522762452287Coding
107. (TTGG)31224835042483515Coding
108. (GCT)41225012822501293Coding
109. (ACC)41225247462524757Coding
110. (TTGA)31225502672550278Coding
111. (GGC)51525634002563414Coding
112. (TCAA)31225666932566704Coding
113. (TTAT)31225819672581978Coding
114. (GAT)41226083172608328Non coding
115. (TGGC)31226199272619938Coding
116. (CAC)51526394202639434Coding
117. (CCA)51527353592735373Coding
118. (TTCCGC)31828528432852860Coding
119. (TCCT)31228865652886576Coding
120. (CTT)41229269832926994Coding
121. (CCA)41229749892975000Coding
122. (GGT)41230060903006101Coding
123. (GAGC)31230324003032411Coding
124. (TTG)51530473073047321Coding
125. (TAAT)31230580553058066Coding-Non coding
126. (GATT)31230715963071607Coding
127. (AAAT)31231013713101382Non coding
128. (CCAG)31231625593162570Coding
129. (CCA)41231696453169656Coding
130. (CCAA)31232397783239789Coding
131. (GGC)41232856913285702Coding
132. (CAC)51532961173296131Coding
133. (GCC)41233027033302714Coding
134. (ACC)41233114473311458Coding
135. (CCA)41233194203319431Coding
136. (TGG)41233310673331078Coding
137. (TGG)41233428663342877Coding
138. (CCA)41233598533359864Coding
139. (TTGG)31233702763370287Coding
140. (CGG)51533708623370876Coding
141. (GTT)41233778153377826Non coding
142. (CCG)41234120143412025Coding
143. (ATTT)31234220313422042Coding
144. (CGG)41234507153450726Coding
145. (TGG)41234520803452091Coding
146. (CAGG)31234536573453668Non coding
147. (GCC)41234929573492968Coding
148. (CCG)51535519163551930Coding
149. (ATC)41235677273567738Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.