CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. GT-I (NC_017038 3570005 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (GCC)4128333083341Coding
3. (CGT)4129455694567Coding
4. (CAT)412106170106181Coding
5. (CGG)412108607108618Coding
6. (CGC)412135855135866Coding
7. (CAA)412140789140800Coding
8. (GCG)412142017142028Coding
9. (CAC)412148850148861Coding
10. (TGG)412169002169013Coding
11. (TGG)412217304217315Coding
12. (GGC)412220957220968Coding
13. (GGA)412321449321460Non coding
14. (CAC)412345725345736Coding
15. (GAT)412348064348075Non coding
16. (TAC)412351023351034Non coding
17. (CGG)515356381356395Coding
18. (CAC)412385601385612Coding
19. (GCC)412394610394621Coding
20. (CGC)412408945408956Coding
21. (TGG)412451575451586Coding
22. (TAA)412464290464301Coding
23. (ATC)412481395481406Coding
24. (GTT)412550062550073Non coding
25. (GGT)412604142604153Coding
26. (CCA)412611715611726Coding
27. (CCA)412618116618127Coding
28. (AAT)412661902661913Coding
29. (GTG)515699369699383Coding
30. (TCA)412777262777273Coding
31. (GCC)515798317798331Coding
32. (GAC)412811311811322Coding
33. (CCA)412841662841673Coding
34. (CTT)412857665857676Coding
35. (GTT)412865525865536Coding
36. (TGG)412883026883037Coding
37. (CGG)412937430937441Coding
38. (GGC)412977509977520Coding
39. (CCG)412992807992818Coding
40. (GGC)51510577641057778Coding
41. (GTG)51511782761178290Coding
42. (GCG)41212152571215268Coding
43. (ACC)41212308871230898Coding
44. (GGT)41212568201256831Coding
45. (TGG)41213327711332782Coding
46. (AAG)41213465021346513Coding
47. (CCA)41213505941350605Coding
48. (CAA)41213776951377706Coding
49. (GTC)41214239131423924Coding
50. (ACC)41214484761448487Coding
51. (CCA)41215054971505508Coding
52. (GAG)41215231771523188Non coding
53. (TGG)41215772151577226Coding
54. (AGG)41215931561593167Coding
55. (TTG)41216374211637432Coding
56. (CGC)41216403061640317Coding
57. (GGC)51516796731679687Coding
58. (CCA)41217692741769285Coding
59. (TGG)41217837291783740Coding
60. (TCC)41218369551836966Coding
61. (GCC)41218733891873400Coding
62. (TTG)41220458562045867Non coding
63. (ACC)51520634952063509Coding
64. (TGG)41221508952150906Coding
65. (ACA)41221797422179753Non coding
66. (GCG)41223427332342744Coding
67. (CAC)41223718332371844Coding
68. (TTG)41223748582374869Non coding
69. (CCA)41224254142425425Coding
70. (CGG)41224522762452287Coding
71. (GCT)41225012822501293Coding
72. (ACC)41225247462524757Coding
73. (GGC)51525634002563414Coding
74. (GAT)41226083172608328Non coding
75. (CAC)51526394202639434Coding
76. (CCA)51527353592735373Coding
77. (CTT)41229269832926994Coding
78. (CCA)41229749892975000Coding
79. (GGT)41230060903006101Coding
80. (TTG)51530473073047321Coding
81. (CCA)41231696453169656Coding
82. (GGC)41232856913285702Coding
83. (CAC)51532961173296131Coding
84. (GCC)41233027033302714Coding
85. (ACC)41233114473311458Coding
86. (CCA)41233194203319431Coding
87. (TGG)41233310673331078Coding
88. (TGG)41233428663342877Coding
89. (CCA)41233598533359864Coding
90. (CGG)51533708623370876Coding
91. (GTT)41233778153377826Non coding
92. (CCG)41234120143412025Coding
93. (CGG)41234507153450726Coding
94. (TGG)41234520803452091Coding
95. (GCC)41234929573492968Coding
96. (CCG)51535519163551930Coding
97. (ATC)41235677273567738Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.