CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Synechocystis sp. PCC 6803 substr. GT-I (NC_017038 3570005 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTT)3126073160742Coding
2. (GATT)312250112250123Coding-Non coding
3. (GCAG)312273309273320Coding
4. (GTTG)312288675288686Coding
5. (TTTA)312358877358888Coding
6. (GTTA)312450610450621Non coding
7. (CGAC)312471268471279Coding
8. (TAAA)312487155487166Coding
9. (CCAA)312531121531132Coding
10. (TTGA)312583156583167Coding
11. (AGCC)312735372735383Coding
12. (CATA)312915152915163Coding
13. (GGTT)31210813251081336Coding
14. (TAAC)31213181971318208Coding
15. (TGCT)31213311521331163Non coding
16. (CAAT)31213759391375950Coding
17. (GACG)41614109361410951Coding
18. (TGGG)31214429381442949Coding
19. (TTTA)31216345081634519Coding
20. (ACCA)31217310161731027Coding
21. (TGGG)31217441221744133Coding
22. (GGGA)31217641801764191Coding
23. (AAAC)31217754701775481Coding
24. (GGAT)31218237351823746Non coding
25. (CCGG)31221108452110856Coding
26. (TTAA)31221881992188210Non coding
27. (ACAA)31222849402284951Non coding
28. (TTGG)31224835042483515Coding
29. (TTGA)31225502672550278Coding
30. (TCAA)31225666932566704Coding
31. (TTAT)31225819672581978Coding
32. (TGGC)31226199272619938Coding
33. (TCCT)31228865652886576Coding
34. (GAGC)31230324003032411Coding
35. (TAAT)31230580553058066Coding-Non coding
36. (GATT)31230715963071607Coding
37. (AAAT)31231013713101382Non coding
38. (CCAG)31231625593162570Coding
39. (CCAA)31232397783239789Coding
40. (TTGG)31233702763370287Coding
41. (ATTT)31234220313422042Coding
42. (CAGG)31234536573453668Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.