CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. PCC-N (NC_017052 3570104 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (ATTT)3126073160742Coding
3. (GCC)4128333083341Coding
4. (CGT)4129455694567Coding
5. (CAT)412106170106181Coding
6. (CGG)412108607108618Coding
7. (CGC)412135843135854Coding
8. (CAA)412140777140788Coding
9. (GCG)412142005142016Coding
10. (CAC)412148838148849Coding
11. (TGG)412168990169001Coding
12. (TGG)412217292217303Coding
13. (GGC)412220945220956Coding
14. (GATT)312250100250111Coding-Non coding
15. (GCAG)312273297273308Coding
16. (GTTG)312288663288674Coding
17. (GGA)412321437321448Non coding
18. (CAC)412345713345724Coding
19. (GAT)412348052348063Non coding
20. (TAC)412351011351022Non coding
21. (CGG)515356369356383Coding
22. (TTTA)312358865358876Coding
23. (CAC)412385589385600Coding
24. (GCC)412394598394609Coding
25. (CGC)412408933408944Coding
26. (GTTA)312450598450609Non coding
27. (TGG)412451563451574Coding
28. (TAA)412464278464289Coding
29. (CCCTC)315470858470872Coding
30. (CGAC)312471256471267Coding
31. (ATC)412481383481394Coding
32. (TAAA)312487143487154Coding
33. (CCAA)312531109531120Coding
34. (GTT)412550050550061Non coding
35. (TTGA)312583144583155Coding
36. (GGT)412604130604141Coding
37. (TCTCC)315609577609591Coding
38. (CCA)412611703611714Coding
39. (CCA)412618104618115Coding
40. (CTTCC)315621950621964Coding
41. (AAT)412661890661901Coding
42. (CAGTC)315699085699099Coding
43. (GTG)515699357699371Coding
44. (AGCC)312735359735370Coding
45. (TCA)412777249777260Coding
46. (GCC)515798458798472Coding
47. (GAC)412811452811463Coding
48. (CCA)412841803841814Coding
49. (CTT)412857806857817Coding
50. (GTT)412865666865677Coding
51. (TGG)412883167883178Coding
52. (CATA)312915293915304Coding
53. (CGG)412937571937582Coding
54. (GGC)412977650977661Coding
55. (CCG)412992948992959Coding
56. (GGC)51510579051057919Coding
57. (GGTT)31210814661081477Coding
58. (GTG)51511784171178431Coding
59. (CGGTGG)31811785891178606Coding
60. (GCG)41212153981215409Coding
61. (ACC)41212310281231039Coding
62. (GGT)41212569611256972Coding
63. (TTATT)31512933031293317Coding
64. (TAAC)31213182931318304Coding
65. (TGCT)31213312481331259Non coding
66. (TGG)41213328671332878Coding
67. (AAG)41213465981346609Coding
68. (CCA)41213506901350701Coding
69. (CAAT)31213760351376046Coding
70. (CAA)41213777911377802Coding
71. (GACG)41614110321411047Coding
72. (GTC)41214240101424021Coding
73. (TGGG)31214430351443046Coding
74. (ACC)41214485731448584Coding
75. (CCA)41215055941505605Coding
76. (GAG)41215232741523285Non coding
77. (TGG)41215773121577323Coding
78. (AGG)41215932531593264Coding
79. (TGGCGG)31816073061607323Coding
80. (TTTA)31216346051634616Coding
81. (TTG)41216375181637529Coding
82. (CGC)41216404031640414Coding
83. (GGC)51516797701679784Coding
84. (ACCA)31217311131731124Coding
85. (TGGG)31217442191744230Coding
86. (GGGA)31217642771764288Coding
87. (CCA)41217693711769382Coding
88. (AAAC)31217755671775578Coding
89. (TGG)41217838261783837Coding
90. (GGAT)31218238321823843Non coding
91. (TCC)41218370521837063Coding
92. (GCC)41218734861873497Coding
93. (TTG)41220459532045964Non coding
94. (ACC)51520635922063606Coding
95. (GGGCA)31520782542078268Non coding
96. (CCGG)31221109422110953Coding
97. (ACCGCC)31821395242139541Coding
98. (TGG)41221509922151003Coding
99. (ACA)41221798392179850Non coding
100. (TTAA)31221882962188307Non coding
101. (ACAA)31222850372285048Non coding
102. (GCG)41223428302342841Coding
103. (CAC)41223719302371941Coding
104. (TTG)41223749552374966Non coding
105. (CCA)41224255112425522Coding
106. (CGG)41224523732452384Coding
107. (TTGG)31224836012483612Coding
108. (GCT)41225013792501390Coding
109. (ACC)41225248432524854Coding
110. (TTGA)31225503642550375Coding
111. (GGC)51525634972563511Coding
112. (TCAA)31225667902566801Coding
113. (TTAT)31225820642582075Coding
114. (GAT)41226084142608425Non coding
115. (TGGC)31226200242620035Coding
116. (CAC)51526395172639531Coding
117. (CCA)51527354572735471Coding
118. (TTCCGC)31828529412852958Coding
119. (TCCT)31228866642886675Coding
120. (CTT)41229270822927093Coding
121. (CCA)41229750882975099Coding
122. (GGT)41230061893006200Coding
123. (GAGC)31230324993032510Coding
124. (TTG)51530474063047420Coding
125. (TAAT)31230581543058165Coding-Non coding
126. (GATT)31230716953071706Coding
127. (AAAT)31231014703101481Non coding
128. (CCAG)31231626583162669Coding
129. (CCA)41231697443169755Coding
130. (CCAA)31232398773239888Coding
131. (GGC)41232857903285801Coding
132. (CAC)51532962163296230Coding
133. (GCC)41233028023302813Coding
134. (ACC)41233115463311557Coding
135. (CCA)41233195193319530Coding
136. (TGG)41233311663331177Coding
137. (TGG)41233429653342976Coding
138. (CCA)41233599523359963Coding
139. (TTGG)31233703753370386Coding
140. (CGG)51533709613370975Coding
141. (GTT)41233779143377925Non coding
142. (CCG)41234121133412124Coding
143. (ATTT)31234221303422141Coding
144. (CGG)41234508143450825Coding
145. (TGG)41234521793452190Coding
146. (CAGG)31234537563453767Non coding
147. (GCC)41234930563493067Coding
148. (CCG)51535520153552029Coding
149. (ATC)41235678263567837Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.