CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Synechocystis sp. PCC 6803 substr. PCC-N (NC_017052 3570104 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (GCC)4128333083341Coding
3. (CGT)4129455694567Coding
4. (CAT)412106170106181Coding
5. (CGG)412108607108618Coding
6. (CGC)412135843135854Coding
7. (CAA)412140777140788Coding
8. (GCG)412142005142016Coding
9. (CAC)412148838148849Coding
10. (TGG)412168990169001Coding
11. (TGG)412217292217303Coding
12. (GGC)412220945220956Coding
13. (GGA)412321437321448Non coding
14. (CAC)412345713345724Coding
15. (GAT)412348052348063Non coding
16. (TAC)412351011351022Non coding
17. (CGG)515356369356383Coding
18. (CAC)412385589385600Coding
19. (GCC)412394598394609Coding
20. (CGC)412408933408944Coding
21. (TGG)412451563451574Coding
22. (TAA)412464278464289Coding
23. (ATC)412481383481394Coding
24. (GTT)412550050550061Non coding
25. (GGT)412604130604141Coding
26. (CCA)412611703611714Coding
27. (CCA)412618104618115Coding
28. (AAT)412661890661901Coding
29. (GTG)515699357699371Coding
30. (TCA)412777249777260Coding
31. (GCC)515798458798472Coding
32. (GAC)412811452811463Coding
33. (CCA)412841803841814Coding
34. (CTT)412857806857817Coding
35. (GTT)412865666865677Coding
36. (TGG)412883167883178Coding
37. (CGG)412937571937582Coding
38. (GGC)412977650977661Coding
39. (CCG)412992948992959Coding
40. (GGC)51510579051057919Coding
41. (GTG)51511784171178431Coding
42. (GCG)41212153981215409Coding
43. (ACC)41212310281231039Coding
44. (GGT)41212569611256972Coding
45. (TGG)41213328671332878Coding
46. (AAG)41213465981346609Coding
47. (CCA)41213506901350701Coding
48. (CAA)41213777911377802Coding
49. (GTC)41214240101424021Coding
50. (ACC)41214485731448584Coding
51. (CCA)41215055941505605Coding
52. (GAG)41215232741523285Non coding
53. (TGG)41215773121577323Coding
54. (AGG)41215932531593264Coding
55. (TTG)41216375181637529Coding
56. (CGC)41216404031640414Coding
57. (GGC)51516797701679784Coding
58. (CCA)41217693711769382Coding
59. (TGG)41217838261783837Coding
60. (TCC)41218370521837063Coding
61. (GCC)41218734861873497Coding
62. (TTG)41220459532045964Non coding
63. (ACC)51520635922063606Coding
64. (TGG)41221509922151003Coding
65. (ACA)41221798392179850Non coding
66. (GCG)41223428302342841Coding
67. (CAC)41223719302371941Coding
68. (TTG)41223749552374966Non coding
69. (CCA)41224255112425522Coding
70. (CGG)41224523732452384Coding
71. (GCT)41225013792501390Coding
72. (ACC)41225248432524854Coding
73. (GGC)51525634972563511Coding
74. (GAT)41226084142608425Non coding
75. (CAC)51526395172639531Coding
76. (CCA)51527354572735471Coding
77. (CTT)41229270822927093Coding
78. (CCA)41229750882975099Coding
79. (GGT)41230061893006200Coding
80. (TTG)51530474063047420Coding
81. (CCA)41231697443169755Coding
82. (GGC)41232857903285801Coding
83. (CAC)51532962163296230Coding
84. (GCC)41233028023302813Coding
85. (ACC)41233115463311557Coding
86. (CCA)41233195193319530Coding
87. (TGG)41233311663331177Coding
88. (TGG)41233429653342976Coding
89. (CCA)41233599523359963Coding
90. (CGG)51533709613370975Coding
91. (GTT)41233779143377925Non coding
92. (CCG)41234121133412124Coding
93. (CGG)41234508143450825Coding
94. (TGG)41234521793452190Coding
95. (GCC)41234930563493067Coding
96. (CCG)51535520153552029Coding
97. (ATC)41235678263567837Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.