CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. PCC-N (NC_017052 3570104 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTT)3126073160742Coding
2. (GATT)312250100250111Coding-Non coding
3. (GCAG)312273297273308Coding
4. (GTTG)312288663288674Coding
5. (TTTA)312358865358876Coding
6. (GTTA)312450598450609Non coding
7. (CGAC)312471256471267Coding
8. (TAAA)312487143487154Coding
9. (CCAA)312531109531120Coding
10. (TTGA)312583144583155Coding
11. (AGCC)312735359735370Coding
12. (CATA)312915293915304Coding
13. (GGTT)31210814661081477Coding
14. (TAAC)31213182931318304Coding
15. (TGCT)31213312481331259Non coding
16. (CAAT)31213760351376046Coding
17. (GACG)41614110321411047Coding
18. (TGGG)31214430351443046Coding
19. (TTTA)31216346051634616Coding
20. (ACCA)31217311131731124Coding
21. (TGGG)31217442191744230Coding
22. (GGGA)31217642771764288Coding
23. (AAAC)31217755671775578Coding
24. (GGAT)31218238321823843Non coding
25. (CCGG)31221109422110953Coding
26. (TTAA)31221882962188307Non coding
27. (ACAA)31222850372285048Non coding
28. (TTGG)31224836012483612Coding
29. (TTGA)31225503642550375Coding
30. (TCAA)31225667902566801Coding
31. (TTAT)31225820642582075Coding
32. (TGGC)31226200242620035Coding
33. (TCCT)31228866642886675Coding
34. (GAGC)31230324993032510Coding
35. (TAAT)31230581543058165Coding-Non coding
36. (GATT)31230716953071706Coding
37. (AAAT)31231014703101481Non coding
38. (CCAG)31231626583162669Coding
39. (CCAA)31232398773239888Coding
40. (TTGG)31233703753370386Coding
41. (ATTT)31234221303422141Coding
42. (CAGG)31234537563453767Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.