CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. PCC-P (NC_017039 3570115 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (ATTT)3126073160742Coding
3. (GCC)4128333083341Coding
4. (CGT)4129455694567Coding
5. (CAT)412106170106181Coding
6. (CGG)412108607108618Coding
7. (CGC)412135855135866Coding
8. (CAA)412140789140800Coding
9. (GCG)412142017142028Coding
10. (CAC)412148850148861Coding
11. (TGG)412169002169013Coding
12. (TGG)412217304217315Coding
13. (GGC)412220957220968Coding
14. (GATT)312250112250123Coding-Non coding
15. (GCAG)312273309273320Coding
16. (GTTG)312288675288686Coding
17. (GGA)412321449321460Non coding
18. (CAC)412345725345736Coding
19. (GAT)412348064348075Non coding
20. (TAC)412351023351034Non coding
21. (CGG)515356381356395Coding
22. (TTTA)312358877358888Coding
23. (CAC)412385601385612Coding
24. (GCC)412394610394621Coding
25. (CGC)412408945408956Coding
26. (GTTA)312450610450621Non coding
27. (TGG)412451575451586Coding
28. (TAA)412464290464301Coding
29. (CCCTC)315470870470884Coding
30. (CGAC)312471268471279Coding
31. (ATC)412481395481406Coding
32. (TAAA)312487155487166Coding
33. (CCAA)312531121531132Coding
34. (GTT)412550062550073Non coding
35. (TTGA)312583156583167Coding
36. (GGT)412604142604153Coding
37. (TCTCC)315609589609603Coding
38. (CCA)412611715611726Coding
39. (CCA)412618116618127Coding
40. (CTTCC)315621962621976Coding
41. (AAT)412661902661913Coding
42. (CAGTC)315699097699111Coding
43. (GTG)515699369699383Coding
44. (AGCC)312735371735382Coding
45. (TCA)412777261777272Coding
46. (GCC)515798470798484Coding
47. (GAC)412811464811475Coding
48. (CCA)412841815841826Coding
49. (CTT)412857818857829Coding
50. (GTT)412865678865689Coding
51. (TGG)412883179883190Coding
52. (CATA)312915305915316Coding
53. (CGG)412937583937594Coding
54. (GGC)412977662977673Coding
55. (CCG)412992960992971Coding
56. (GGC)51510579171057931Coding
57. (GGTT)31210814781081489Coding
58. (GTG)51511784291178443Coding
59. (CGGTGG)31811786011178618Coding
60. (GCG)41212154101215421Coding
61. (ACC)41212310401231051Coding
62. (GGT)41212569731256984Coding
63. (TTATT)31512933151293329Coding
64. (TAAC)31213183051318316Coding
65. (TGCT)31213312601331271Non coding
66. (TGG)41213328791332890Coding
67. (AAG)41213466101346621Coding
68. (CCA)41213507021350713Coding
69. (CAAT)31213760471376058Coding
70. (CAA)41213778031377814Coding
71. (GACG)41614110441411059Coding
72. (GTC)41214240221424033Coding
73. (TGGG)31214430471443058Coding
74. (ACC)41214485851448596Coding
75. (CCA)41215056061505617Coding
76. (GAG)41215232861523297Non coding
77. (TGG)41215773241577335Coding
78. (AGG)41215932651593276Coding
79. (TGGCGG)31816073181607335Coding
80. (TTTA)31216346171634628Coding
81. (TTG)41216375301637541Coding
82. (CGC)41216404151640426Coding
83. (GGC)51516797821679796Coding
84. (ACCA)31217311251731136Coding
85. (TGGG)31217442311744242Coding
86. (GGGA)31217642891764300Coding
87. (CCA)41217693831769394Coding
88. (AAAC)31217755791775590Coding
89. (TGG)41217838381783849Coding
90. (GGAT)31218238441823855Non coding
91. (TCC)41218370641837075Coding
92. (GCC)41218734981873509Coding
93. (TTG)41220459652045976Non coding
94. (ACC)51520636042063618Coding
95. (GGGCA)31520782662078280Non coding
96. (CCGG)31221109542110965Coding
97. (ACCGCC)31821395362139553Coding
98. (TGG)41221510042151015Coding
99. (ACA)41221798512179862Non coding
100. (TTAA)31221883082188319Non coding
101. (ACAA)31222850492285060Non coding
102. (GCG)41223428422342853Coding
103. (CAC)41223719422371953Coding
104. (TTG)41223749672374978Non coding
105. (CCA)41224255232425534Coding
106. (CGG)41224523852452396Coding
107. (TTGG)31224836132483624Coding
108. (GCT)41225013912501402Coding
109. (ACC)41225248552524866Coding
110. (TTGA)31225503762550387Coding
111. (GGC)51525635092563523Coding
112. (TCAA)31225668022566813Coding
113. (TTAT)31225820762582087Coding
114. (GAT)41226084262608437Non coding
115. (TGGC)31226200362620047Coding
116. (CAC)51526395292639543Coding
117. (CCA)51527354692735483Coding
118. (TTCCGC)31828529532852970Coding
119. (TCCT)31228866752886686Coding
120. (CTT)41229270932927104Coding
121. (CCA)41229750992975110Coding
122. (GGT)41230062003006211Coding
123. (GAGC)31230325103032521Coding
124. (TTG)51530474173047431Coding
125. (TAAT)31230581653058176Coding-Non coding
126. (GATT)31230717063071717Coding
127. (AAAT)31231014813101492Non coding
128. (CCAG)31231626693162680Coding
129. (CCA)41231697553169766Coding
130. (CCAA)31232398883239899Coding
131. (GGC)41232858013285812Coding
132. (CAC)51532962273296241Coding
133. (GCC)41233028133302824Coding
134. (ACC)41233115573311568Coding
135. (CCA)41233195303319541Coding
136. (TGG)41233311773331188Coding
137. (TGG)41233429763342987Coding
138. (CCA)41233599633359974Coding
139. (TTGG)31233703863370397Coding
140. (CGG)51533709723370986Coding
141. (GTT)41233779253377936Non coding
142. (CCG)41234121243412135Coding
143. (ATTT)31234221413422152Coding
144. (CGG)41234508253450836Coding
145. (TGG)41234521903452201Coding
146. (CAGG)31234537673453778Non coding
147. (GCC)41234930673493078Coding
148. (CCG)51535520263552040Coding
149. (ATC)41235678373567848Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.