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Organism:
Synechocystis sp. PCC 6803 substr. PCC-P
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(NC_017039 , 3570115 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
149
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Density of SSR
:
1SSR/
23.96
kb
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Average length of SSR
:
12.59
bp
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Coding
:
129
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Non-Coding
:
18
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Coding and Non-Coding
:
2
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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0
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0
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97
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42
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6
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4
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149
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (CAT)4 | 12 | 9076 | 9087 | Coding |
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2.
| (GCC)4 | 12 | 83330 | 83341 | Coding |
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3.
| (CGT)4 | 12 | 94556 | 94567 | Coding |
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4.
| (CAT)4 | 12 | 106170 | 106181 | Coding |
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5.
| (CGG)4 | 12 | 108607 | 108618 | Coding |
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6.
| (CGC)4 | 12 | 135855 | 135866 | Coding |
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7.
| (CAA)4 | 12 | 140789 | 140800 | Coding |
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8.
| (GCG)4 | 12 | 142017 | 142028 | Coding |
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9.
| (CAC)4 | 12 | 148850 | 148861 | Coding |
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10.
| (TGG)4 | 12 | 169002 | 169013 | Coding |
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11.
| (TGG)4 | 12 | 217304 | 217315 | Coding |
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12.
| (GGC)4 | 12 | 220957 | 220968 | Coding |
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13.
| (GGA)4 | 12 | 321449 | 321460 | Non coding |
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14.
| (CAC)4 | 12 | 345725 | 345736 | Coding |
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15.
| (GAT)4 | 12 | 348064 | 348075 | Non coding |
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16.
| (TAC)4 | 12 | 351023 | 351034 | Non coding |
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17.
| (CGG)5 | 15 | 356381 | 356395 | Coding |
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18.
| (CAC)4 | 12 | 385601 | 385612 | Coding |
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19.
| (GCC)4 | 12 | 394610 | 394621 | Coding |
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20.
| (CGC)4 | 12 | 408945 | 408956 | Coding |
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21.
| (TGG)4 | 12 | 451575 | 451586 | Coding |
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22.
| (TAA)4 | 12 | 464290 | 464301 | Coding |
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23.
| (ATC)4 | 12 | 481395 | 481406 | Coding |
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24.
| (GTT)4 | 12 | 550062 | 550073 | Non coding |
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25.
| (GGT)4 | 12 | 604142 | 604153 | Coding |
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26.
| (CCA)4 | 12 | 611715 | 611726 | Coding |
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27.
| (CCA)4 | 12 | 618116 | 618127 | Coding |
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28.
| (AAT)4 | 12 | 661902 | 661913 | Coding |
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29.
| (GTG)5 | 15 | 699369 | 699383 | Coding |
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30.
| (TCA)4 | 12 | 777261 | 777272 | Coding |
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31.
| (GCC)5 | 15 | 798470 | 798484 | Coding |
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32.
| (GAC)4 | 12 | 811464 | 811475 | Coding |
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33.
| (CCA)4 | 12 | 841815 | 841826 | Coding |
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34.
| (CTT)4 | 12 | 857818 | 857829 | Coding |
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35.
| (GTT)4 | 12 | 865678 | 865689 | Coding |
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36.
| (TGG)4 | 12 | 883179 | 883190 | Coding |
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37.
| (CGG)4 | 12 | 937583 | 937594 | Coding |
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38.
| (GGC)4 | 12 | 977662 | 977673 | Coding |
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39.
| (CCG)4 | 12 | 992960 | 992971 | Coding |
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40.
| (GGC)5 | 15 | 1057917 | 1057931 | Coding |
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41.
| (GTG)5 | 15 | 1178429 | 1178443 | Coding |
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42.
| (GCG)4 | 12 | 1215410 | 1215421 | Coding |
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43.
| (ACC)4 | 12 | 1231040 | 1231051 | Coding |
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44.
| (GGT)4 | 12 | 1256973 | 1256984 | Coding |
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45.
| (TGG)4 | 12 | 1332879 | 1332890 | Coding |
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46.
| (AAG)4 | 12 | 1346610 | 1346621 | Coding |
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47.
| (CCA)4 | 12 | 1350702 | 1350713 | Coding |
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48.
| (CAA)4 | 12 | 1377803 | 1377814 | Coding |
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49.
| (GTC)4 | 12 | 1424022 | 1424033 | Coding |
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50.
| (ACC)4 | 12 | 1448585 | 1448596 | Coding |
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51.
| (CCA)4 | 12 | 1505606 | 1505617 | Coding |
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52.
| (GAG)4 | 12 | 1523286 | 1523297 | Non coding |
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53.
| (TGG)4 | 12 | 1577324 | 1577335 | Coding |
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54.
| (AGG)4 | 12 | 1593265 | 1593276 | Coding |
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55.
| (TTG)4 | 12 | 1637530 | 1637541 | Coding |
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56.
| (CGC)4 | 12 | 1640415 | 1640426 | Coding |
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57.
| (GGC)5 | 15 | 1679782 | 1679796 | Coding |
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58.
| (CCA)4 | 12 | 1769383 | 1769394 | Coding |
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59.
| (TGG)4 | 12 | 1783838 | 1783849 | Coding |
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60.
| (TCC)4 | 12 | 1837064 | 1837075 | Coding |
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61.
| (GCC)4 | 12 | 1873498 | 1873509 | Coding |
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62.
| (TTG)4 | 12 | 2045965 | 2045976 | Non coding |
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63.
| (ACC)5 | 15 | 2063604 | 2063618 | Coding |
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64.
| (TGG)4 | 12 | 2151004 | 2151015 | Coding |
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65.
| (ACA)4 | 12 | 2179851 | 2179862 | Non coding |
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66.
| (GCG)4 | 12 | 2342842 | 2342853 | Coding |
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67.
| (CAC)4 | 12 | 2371942 | 2371953 | Coding |
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68.
| (TTG)4 | 12 | 2374967 | 2374978 | Non coding |
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69.
| (CCA)4 | 12 | 2425523 | 2425534 | Coding |
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70.
| (CGG)4 | 12 | 2452385 | 2452396 | Coding |
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71.
| (GCT)4 | 12 | 2501391 | 2501402 | Coding |
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72.
| (ACC)4 | 12 | 2524855 | 2524866 | Coding |
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73.
| (GGC)5 | 15 | 2563509 | 2563523 | Coding |
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74.
| (GAT)4 | 12 | 2608426 | 2608437 | Non coding |
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75.
| (CAC)5 | 15 | 2639529 | 2639543 | Coding |
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76.
| (CCA)5 | 15 | 2735469 | 2735483 | Coding |
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77.
| (CTT)4 | 12 | 2927093 | 2927104 | Coding |
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78.
| (CCA)4 | 12 | 2975099 | 2975110 | Coding |
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79.
| (GGT)4 | 12 | 3006200 | 3006211 | Coding |
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80.
| (TTG)5 | 15 | 3047417 | 3047431 | Coding |
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81.
| (CCA)4 | 12 | 3169755 | 3169766 | Coding |
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82.
| (GGC)4 | 12 | 3285801 | 3285812 | Coding |
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83.
| (CAC)5 | 15 | 3296227 | 3296241 | Coding |
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84.
| (GCC)4 | 12 | 3302813 | 3302824 | Coding |
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85.
| (ACC)4 | 12 | 3311557 | 3311568 | Coding |
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86.
| (CCA)4 | 12 | 3319530 | 3319541 | Coding |
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87.
| (TGG)4 | 12 | 3331177 | 3331188 | Coding |
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88.
| (TGG)4 | 12 | 3342976 | 3342987 | Coding |
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89.
| (CCA)4 | 12 | 3359963 | 3359974 | Coding |
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90.
| (CGG)5 | 15 | 3370972 | 3370986 | Coding |
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91.
| (GTT)4 | 12 | 3377925 | 3377936 | Non coding |
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92.
| (CCG)4 | 12 | 3412124 | 3412135 | Coding |
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93.
| (CGG)4 | 12 | 3450825 | 3450836 | Coding |
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94.
| (TGG)4 | 12 | 3452190 | 3452201 | Coding |
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95.
| (GCC)4 | 12 | 3493067 | 3493078 | Coding |
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96.
| (CCG)5 | 15 | 3552026 | 3552040 | Coding |
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97.
| (ATC)4 | 12 | 3567837 | 3567848 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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