CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. PCC-P (NC_017039 3570115 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAT)41290769087Coding
2. (GCC)4128333083341Coding
3. (CGT)4129455694567Coding
4. (CAT)412106170106181Coding
5. (CGG)412108607108618Coding
6. (CGC)412135855135866Coding
7. (CAA)412140789140800Coding
8. (GCG)412142017142028Coding
9. (CAC)412148850148861Coding
10. (TGG)412169002169013Coding
11. (TGG)412217304217315Coding
12. (GGC)412220957220968Coding
13. (GGA)412321449321460Non coding
14. (CAC)412345725345736Coding
15. (GAT)412348064348075Non coding
16. (TAC)412351023351034Non coding
17. (CGG)515356381356395Coding
18. (CAC)412385601385612Coding
19. (GCC)412394610394621Coding
20. (CGC)412408945408956Coding
21. (TGG)412451575451586Coding
22. (TAA)412464290464301Coding
23. (ATC)412481395481406Coding
24. (GTT)412550062550073Non coding
25. (GGT)412604142604153Coding
26. (CCA)412611715611726Coding
27. (CCA)412618116618127Coding
28. (AAT)412661902661913Coding
29. (GTG)515699369699383Coding
30. (TCA)412777261777272Coding
31. (GCC)515798470798484Coding
32. (GAC)412811464811475Coding
33. (CCA)412841815841826Coding
34. (CTT)412857818857829Coding
35. (GTT)412865678865689Coding
36. (TGG)412883179883190Coding
37. (CGG)412937583937594Coding
38. (GGC)412977662977673Coding
39. (CCG)412992960992971Coding
40. (GGC)51510579171057931Coding
41. (GTG)51511784291178443Coding
42. (GCG)41212154101215421Coding
43. (ACC)41212310401231051Coding
44. (GGT)41212569731256984Coding
45. (TGG)41213328791332890Coding
46. (AAG)41213466101346621Coding
47. (CCA)41213507021350713Coding
48. (CAA)41213778031377814Coding
49. (GTC)41214240221424033Coding
50. (ACC)41214485851448596Coding
51. (CCA)41215056061505617Coding
52. (GAG)41215232861523297Non coding
53. (TGG)41215773241577335Coding
54. (AGG)41215932651593276Coding
55. (TTG)41216375301637541Coding
56. (CGC)41216404151640426Coding
57. (GGC)51516797821679796Coding
58. (CCA)41217693831769394Coding
59. (TGG)41217838381783849Coding
60. (TCC)41218370641837075Coding
61. (GCC)41218734981873509Coding
62. (TTG)41220459652045976Non coding
63. (ACC)51520636042063618Coding
64. (TGG)41221510042151015Coding
65. (ACA)41221798512179862Non coding
66. (GCG)41223428422342853Coding
67. (CAC)41223719422371953Coding
68. (TTG)41223749672374978Non coding
69. (CCA)41224255232425534Coding
70. (CGG)41224523852452396Coding
71. (GCT)41225013912501402Coding
72. (ACC)41225248552524866Coding
73. (GGC)51525635092563523Coding
74. (GAT)41226084262608437Non coding
75. (CAC)51526395292639543Coding
76. (CCA)51527354692735483Coding
77. (CTT)41229270932927104Coding
78. (CCA)41229750992975110Coding
79. (GGT)41230062003006211Coding
80. (TTG)51530474173047431Coding
81. (CCA)41231697553169766Coding
82. (GGC)41232858013285812Coding
83. (CAC)51532962273296241Coding
84. (GCC)41233028133302824Coding
85. (ACC)41233115573311568Coding
86. (CCA)41233195303319541Coding
87. (TGG)41233311773331188Coding
88. (TGG)41233429763342987Coding
89. (CCA)41233599633359974Coding
90. (CGG)51533709723370986Coding
91. (GTT)41233779253377936Non coding
92. (CCG)41234121243412135Coding
93. (CGG)41234508253450836Coding
94. (TGG)41234521903452201Coding
95. (GCC)41234930673493078Coding
96. (CCG)51535520263552040Coding
97. (ATC)41235678373567848Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.