CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechocystis sp. PCC 6803 substr. PCC-P (NC_017039 3570115 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 149     Density of SSR      : 1SSR/ 23.96 kb   Average length of SSR  : 12.59 bp
Coding      : 129     Non-Coding           : 18   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 97 42 6 4 149
IMPERFECT 11 29 998 672 91 51 1852
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTT)3126073160742Coding
2. (GATT)312250112250123Coding-Non coding
3. (GCAG)312273309273320Coding
4. (GTTG)312288675288686Coding
5. (TTTA)312358877358888Coding
6. (GTTA)312450610450621Non coding
7. (CGAC)312471268471279Coding
8. (TAAA)312487155487166Coding
9. (CCAA)312531121531132Coding
10. (TTGA)312583156583167Coding
11. (AGCC)312735371735382Coding
12. (CATA)312915305915316Coding
13. (GGTT)31210814781081489Coding
14. (TAAC)31213183051318316Coding
15. (TGCT)31213312601331271Non coding
16. (CAAT)31213760471376058Coding
17. (GACG)41614110441411059Coding
18. (TGGG)31214430471443058Coding
19. (TTTA)31216346171634628Coding
20. (ACCA)31217311251731136Coding
21. (TGGG)31217442311744242Coding
22. (GGGA)31217642891764300Coding
23. (AAAC)31217755791775590Coding
24. (GGAT)31218238441823855Non coding
25. (CCGG)31221109542110965Coding
26. (TTAA)31221883082188319Non coding
27. (ACAA)31222850492285060Non coding
28. (TTGG)31224836132483624Coding
29. (TTGA)31225503762550387Coding
30. (TCAA)31225668022566813Coding
31. (TTAT)31225820762582087Coding
32. (TGGC)31226200362620047Coding
33. (TCCT)31228866752886686Coding
34. (GAGC)31230325103032521Coding
35. (TAAT)31230581653058176Coding-Non coding
36. (GATT)31230717063071717Coding
37. (AAAT)31231014813101492Non coding
38. (CCAG)31231626693162680Coding
39. (CCAA)31232398883239899Coding
40. (TTGG)31233703863370397Coding
41. (ATTT)31234221413422152Coding
42. (CAGG)31234537673453778Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.