CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Thermosynechococcus elongatus BP-1 (NC_004113 2593858 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 73     Density of SSR      : 1SSR/ 35.53 kb   Average length of SSR  : 12.33 bp
Coding      : 65     Non-Coding           : 7   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 45 25 1 2 73
IMPERFECT 0 39 880 448 60 47 1474
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCC)4126659466605Coding
2. (GCGG)3126832768338Coding
3. (GGC)412106894106905Coding
4. (TCAT)312114285114296Coding-Non coding
5. (TACC)312209960209971Coding
6. (CGGC)312226345226356Coding
7. (GGCACC)318261950261967Coding
8. (GCC)412301156301167Coding
9. (CAA)412302102302113Coding
10. (ATG)412306775306786Coding
11. (AACC)312330345330356Coding
12. (TTGGCC)318346671346688Coding
13. (CCA)412352142352153Coding
14. (ATG)412356410356421Coding
15. (ATG)412359945359956Coding
16. (AAT)412393789393800Coding
17. (TGC)412412066412077Coding
18. (CCAG)312453638453649Coding
19. (GCT)412572951572962Coding
20. (CGG)412606238606249Coding
21. (ATTA)312615391615402Non coding
22. (ACCG)312650974650985Coding
23. (CGC)412663822663833Coding
24. (GAG)412723009723020Coding
25. (CAC)412734393734404Coding
26. (GCTG)312751114751125Coding
27. (TGC)412767672767683Coding
28. (CAC)412785069785080Coding
29. (GCC)412792250792261Coding
30. (CGC)412855586855597Coding
31. (CGG)412867882867893Coding
32. (CTC)412873009873020Coding
33. (AGC)412971033971044Coding
34. (AGC)41210014931001504Coding
35. (CTAT)31210323891032400Coding
36. (TGC)41210375661037577Coding
37. (CTG)41210521741052185Coding
38. (GCC)41211046521104663Coding
39. (GGT)61811156671115684Coding
40. (GCAA)31212981551298166Coding
41. (ACC)41213245441324555Coding
42. (GTT)41213547681354779Coding
43. (ACC)41214289411428952Coding
44. (AGCC)31214765911476602Coding
45. (GCA)41214872171487228Coding
46. (CCA)41215030731503084Coding
47. (CGCC)31215509811550992Coding
48. (CCCT)31215885201588531Coding
49. (TGAG)31216437661643777Coding
50. (ACCC)31217122611712272Coding
51. (ACCA)31217784161778427Coding
52. (CTG)41218671561867167Coding
53. (AAAT)31219249981925009Non coding
54. (CAG)51519327851932799Coding
55. (TCC)41219538751953886Coding
56. (CTG)41220302032030214Coding
57. (GAAG)31220361112036122Non coding
58. (CTGC)31220419142041925Coding
59. (CCAC)31220776062077617Coding
60. (TTGA)31220989252098936Non coding
61. (GTGA)31221319142131925Coding
62. (TGC)41221408212140832Coding
63. (GCT)41221850122185023Coding
64. (AAAT)31222054092205420Non coding
65. (GGGTT)31522152942215308Coding
66. (TTGA)31222424762242487Coding
67. (ACC)41222506032250614Coding
68. (TGG)41222554502255461Coding
69. (CCA)41222990792299090Coding
70. (CTA)41223393022339313Non coding
71. (TAG)41223393332339344Non coding
72. (GCC)41223495552349566Coding
73. (CCG)41225295132529524Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.