CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Thermosynechococcus elongatus BP-1 (NC_004113 2593858 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 73     Density of SSR      : 1SSR/ 35.53 kb   Average length of SSR  : 12.33 bp
Coding      : 65     Non-Coding           : 7   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 45 25 1 2 73
IMPERFECT 0 39 880 448 60 47 1474
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCC)4126659466605Coding
2. (GGC)412106894106905Coding
3. (GCC)412301156301167Coding
4. (CAA)412302102302113Coding
5. (ATG)412306775306786Coding
6. (CCA)412352142352153Coding
7. (ATG)412356410356421Coding
8. (ATG)412359945359956Coding
9. (AAT)412393789393800Coding
10. (TGC)412412066412077Coding
11. (GCT)412572951572962Coding
12. (CGG)412606238606249Coding
13. (CGC)412663822663833Coding
14. (GAG)412723009723020Coding
15. (CAC)412734393734404Coding
16. (TGC)412767672767683Coding
17. (CAC)412785069785080Coding
18. (GCC)412792250792261Coding
19. (CGC)412855586855597Coding
20. (CGG)412867882867893Coding
21. (CTC)412873009873020Coding
22. (AGC)412971033971044Coding
23. (AGC)41210014931001504Coding
24. (TGC)41210375661037577Coding
25. (CTG)41210521741052185Coding
26. (GCC)41211046521104663Coding
27. (GGT)61811156671115684Coding
28. (ACC)41213245441324555Coding
29. (GTT)41213547681354779Coding
30. (ACC)41214289411428952Coding
31. (GCA)41214872171487228Coding
32. (CCA)41215030731503084Coding
33. (CTG)41218671561867167Coding
34. (CAG)51519327851932799Coding
35. (TCC)41219538751953886Coding
36. (CTG)41220302032030214Coding
37. (TGC)41221408212140832Coding
38. (GCT)41221850122185023Coding
39. (ACC)41222506032250614Coding
40. (TGG)41222554502255461Coding
41. (CCA)41222990792299090Coding
42. (CTA)41223393022339313Non coding
43. (TAG)41223393332339344Non coding
44. (GCC)41223495552349566Coding
45. (CCG)41225295132529524Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.